I. Summary

SecReT6 ID	328
Strain	Rhodobacter sphaeroides KD131
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_011958
Location	558629..583934
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	RSKD131_3633	553652..554674 [+], 1023	221369470	hypothetical protein
2	RSKD131_3634	554667..555758 [+], 1092	221369471	3-oxoacyl-(acyl carrier protein) synthase
3	RSKD131_3635	555755..556756 [+], 1002	221369472	hypothetical protein
4	RSKD131_3636	556753..557532 [+], 780	221369473	hypothetical protein
5	RSKD131_3637	557555..558241 [+], 687	221369474	hypothetical protein
6	RSKD131_3638	558238..558636 [-], 399	221369475	hypothetical protein
7	RSKD131_3639	558629..561298 [-], 2670	221369476	ATPase AAA-2 domain protein precursor	TssH
8	RSKD131_3640	561412..563418 [+], 2007	221369477	Serine/threonine protein kinase
9	RSKD131_3641	563494..564588 [+], 1095	221369478	ImpA domain protein	TssA
10	RSKD131_3642	564607..565137 [+], 531	221369479	hypothetical protein	TssB
11	RSKD131_3643	565134..566651 [+], 1518	221369480	hypothetical protein	TssC
12	RSKD131_3644	566703..567194 [+], 492	221369481	hypothetical protein	TssD
13	RSKD131_3645	567227..567934 [+], 708	221369482	hypothetical protein	TssE
14	RSKD131_3646	567931..569799 [+], 1869	221369483	hypothetical protein	TssF
15	RSKD131_3647	569898..570761 [+], 864	221369484	hypothetical protein	TssG
16	RSKD131_3648	570755..571984 [+], 1230	221369485	FHA domain containing protein precursor	Fha
17	RSKD131_3649	571992..572429 [+], 438	221369486	hypothetical protein	TssJ
18	RSKD131_3650	572438..573766 [+], 1329	221369487	hypothetical protein	TssK
19	RSKD131_3651	573831..575192 [+], 1362	221369488	OmpA/MotB domain protein precursor	TssL
20	RSKD131_3652	575193..578714 [+], 3522	221369489	ImcF domain protein precursor	TssM
21	RSKD131_3653	578704..579195 [+], 492	221369490	hypothetical protein
22	RSKD131_3654	579206..581509 [-], 2304	221369491	Rhs element Vgr protein	TssI
23	RSKD131_3655	581526..583934 [-], 2409	221369492	hypothetical protein	TssM
24	RSKD131_3656	583934..584782 [-], 849	221369493	hypothetical protein
25	RSKD131_3657	584786..585532 [-], 747	221369494	Protein phosphatase 2C domain protein
26	RSKD131_3658	585675..586439 [+], 765	221369495	OmpA/MotB domain protein precursor	TagL
27	RSKD131_3659	586436..587362 [-], 927	221369496	hypothetical protein
28	RSKD131_3660	587359..587769 [-], 411	221369497	hypothetical protein
29	RSKD131_3661	587769..588842 [-], 1074	221369498	Zinc carboxypeptidase A metalloprotease

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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