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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Avi_6038 (bexD) | 1052613..1053755 [+], 1143 | 222106975 | polysaccharide export protein | |
2 | Avi_6039 (impN) | 1053904..1054809 [-], 906 | 222106976 | serine/threonine protein kinase | |
3 | Avi_6040 (impM) | 1054796..1056247 [-], 1452 | 222106977 | serine/threonine phosphoprotein phosphatase | |
4 | Avi_6041 (impL) | 1056348..1059842 [-], 3495 | 222106978 | IcmF family protein | TssM |
5 | Avi_6042 (impK) | 1059839..1061374 [-], 1536 | 222106979 | OmpA-type porin | TssL |
6 | Avi_6043 (impJ) | 1061371..1062711 [-], 1341 | 222106980 | hypothetical protein | TssK |
7 | Avi_6044 (impI) | 1062701..1063960 [-], 1260 | 222106981 | forkhead-type phosphopeptide-binding protein | Fha |
8 | Avi_6045 (impH) | 1063957..1064967 [-], 1011 | 222106982 | hypothetical protein | TssG |
9 | Avi_6046 (impG) | 1064976..1066757 [-], 1782 | 222106983 | hypothetical protein | TssF |
10 | Avi_6047 (impF) | 1066750..1067259 [-], 510 | 222106984 | hypothetical protein | TssE |
11 | Avi_6048 (impE) | 1067252..1068079 [-], 828 | 222106985 | hypothetical protein | TagJ |
12 | Avi_6049 (impD) | 1068076..1069443 [-], 1368 | 222106986 | hypothetical protein | TssC |
13 | Avi_6050 (impC) | 1069546..1071027 [-], 1482 | 222106987 | hypothetical protein | TssC |
14 | Avi_6051 (impB) | 1071100..1071615 [-], 516 | 222106988 | hypothetical protein | TssB |
15 | Avi_6052 (impA) | 1071691..1072767 [-], 1077 | 222106989 | hypothetical protein | TssA |
16 | Avi_6053 (clpB) | 1072987..1075698 [+], 2712 | 222106990 | ATP-dependent Clp protease ATP-binding subunit | TssH |
17 | Avi_6054 | 1075761..1076237 [+], 477 | 222106991 | hypothetical protein | TssD |
18 | Avi_6056 | 1076487..1076921 [+], 435 | 222106992 | hypothetical protein | |
19 | Avi_6059 (secD) | 1077785..1080304 [+], 2520 | 222106993 | bifunctional preprotein translocase subunit SecD/SecF | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein