SecReT6
I. Summary
SecReT6 ID329 insolico
StrainAgrobacterium vitis S4
Repliconchromosome II [Browse all T6SS(s) in this replicon]
AccessionNC_011988
Location1056348..1076237
Comment
FunctionN/A
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011211
ComponentTssGTssJTssKTssM
Number1011
12
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Avi_6038 (bexD)1052613..1053755 [+], 1143222106975polysaccharide export protein 
2Avi_6039 (impN)1053904..1054809 [-], 906222106976serine/threonine protein kinase 
3Avi_6040 (impM)1054796..1056247 [-], 1452222106977serine/threonine phosphoprotein phosphatase 
4Avi_6041 (impL)1056348..1059842 [-], 3495222106978IcmF family protein  TssM
5Avi_6042 (impK)1059839..1061374 [-], 1536222106979OmpA-type porin  TssL
6Avi_6043 (impJ)1061371..1062711 [-], 1341222106980hypothetical protein  TssK
7Avi_6044 (impI)1062701..1063960 [-], 1260222106981forkhead-type phosphopeptide-binding protein  Fha
8Avi_6045 (impH)1063957..1064967 [-], 1011222106982hypothetical protein  TssG
9Avi_6046 (impG)1064976..1066757 [-], 1782222106983hypothetical protein  TssF
10Avi_6047 (impF)1066750..1067259 [-], 510222106984hypothetical protein  TssE
11Avi_6048 (impE)1067252..1068079 [-], 828222106985hypothetical protein  TagJ
12Avi_6049 (impD)1068076..1069443 [-], 1368222106986hypothetical protein  TssC
13Avi_6050 (impC)1069546..1071027 [-], 1482222106987hypothetical protein  TssC
14Avi_6051 (impB)1071100..1071615 [-], 516222106988hypothetical protein  TssB
15Avi_6052 (impA)1071691..1072767 [-], 1077222106989hypothetical protein  TssA
16Avi_6053 (clpB)1072987..1075698 [+], 2712222106990ATP-dependent Clp protease ATP-binding subunit  TssH
17Avi_60541075761..1076237 [+], 477222106991hypothetical protein  TssD
18Avi_60561076487..1076921 [+], 435222106992hypothetical protein 
19Avi_6059 (secD)1077785..1080304 [+], 2520222106993bifunctional preprotein translocase subunit SecD/SecF 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
Atu4345

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Avi_60541075761..1076237 [+], 477222106991hypothetical protein Atu4345

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU