SecReT6
I. Summary
SecReT6 ID33 insolico
StrainYersinia pestis KIM10+
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_004088
Location3695454..3720115
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1y33483691355..3691507 [-], 15322127224hypothetical protein 
2y33493692664..3693299 [-], 63622127225hypothetical protein 
3y33503693907..3694275 [-], 36922127226insertion sequence protein 
4y33513694329..3694607 [-], 27922127227transposase 
5y33523694700..3695467 [-], 76822127228hypothetical protein 
6y33533695454..3697751 [-], 229822127229hypothetical protein 
7y33543697767..3698402 [-], 63622127230hypothetical protein 
8y33563698934..3699269 [-], 33622127231transposase 
9y33553699010..3699267 [-], 25822127232transposase 
10y33573699323..3699445 [-], 12322127233transposase 
11y33583699479..3699634 [+], 15622127234hypothetical protein 
12y33593700005..3700394 [-], 39022127235hypothetical protein 
13y33603700505..3702727 [-], 222322127236hypothetical protein 
14y33613702742..3705090 [-], 234922127237hypothetical protein  TssI
15y3362 (clpB)3705087..3707735 [-], 264922127238protease  TssH
16y33633708153..3708644 [-], 49222127239hypothetical protein  TssD
17y33643708186..3708671 [+], 48622127240hypothetical protein 
18y33653708648..3710384 [-], 173722127241hypothetical protein  TagL
19y33663710384..3711070 [-], 68722127242hypothetical protein  TssL
20y33673711067..3712419 [-], 135322127243hypothetical protein  TssK
21y33683712431..3713975 [-], 154522127244hypothetical protein  TssC
22y33693714018..3714521 [-], 50422127245hypothetical protein  TssB
23y33703715918..3716289 [-], 37222127246hypothetical protein 
24y33713716794..3717189 [-], 39622127247lipoprotein 
25y33723717402..3717497 [-], 9622127248hypothetical protein 
26y33733717640..3718290 [-], 65122127249hypothetical protein 
27y3374 (ytbI)3719465..3720115 [+], 65122127250N-acylhomoserine lactone synthase 
28y3375 (ytbR)3720096..3720839 [-], 74422127251transcriptional activator 
29y33763721401..3722777 [+], 137722127252hypothetical protein 
30y33773723154..3723987 [+], 83422127253hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1y33633708153..3708644 [-], 49222127239hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation