I. Summary

SecReT6 ID	333
Strain	Azotobacter vinelandii DJ
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_012560
Location	2722432..2743742
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Avin_26560	2717511..2718143 [-], 633	226944734	hypothetical protein
2	Avin_26570	2718194..2719225 [-], 1032	226944735	Pentapeptide repeat-containing protein
3	Avin_26580	2719249..2721867 [-], 2619	226944736	Pentapeptide repeat-containing protein
4	Avin_26590	2721869..2722219 [-], 351	226944737	hypothetical protein
5	Avin_26600	2722432..2724495 [-], 2064	226944738	Rhs element Vgr protein	TssI
6	Avin_26610	2724500..2727160 [-], 2661	226944739	ClpA/B-type protease	TssH
7	Avin_26620	2727153..2728166 [-], 1014	226944740	hypothetical protein	TssG
8	Avin_26630	2728190..2730052 [-], 1863	226944741	hypothetical protein	TssF
9	Avin_26640	2730052..2730594 [-], 543	226944742	hypothetical protein	TssE
10	Avin_26650	2730697..2731179 [-], 483	226944743	hypothetical protein	TssD
11	Avin_26660	2731238..2732740 [-], 1503	226944744	hypothetical protein	TssC
12	Avin_26670	2732754..2733320 [-], 567	226944745	hypothetical protein	TssB
13	Avin_26680	2733396..2734430 [-], 1035	226944746	ImpA domain-containing protein	TssA
14	Avin_26690	2734439..2736217 [-], 1779	226944747	Protein kinase
15	Avin_26700	2736217..2736915 [-], 699	226944748	hypothetical protein
16	Avin_26710	2736912..2740529 [-], 3618	226944749	hypothetical protein	TssM
17	Avin_26720	2740526..2741818 [-], 1293	226944750	hypothetical protein	TssL
18	Avin_26730	2741800..2743167 [-], 1368	226944751	hypothetical protein	TssK
19	Avin_26740	2743164..2743742 [-], 579	226944752	hypothetical protein	TssJ
20	Avin_26760	2744129..2744449 [+], 321	226944753	hypothetical protein
21	Avin_26770	2744487..2746184 [+], 1698	226944754	hypothetical protein	Fha
22	Avin_26780	2746166..2746936 [+], 771	226944755	protein phosphatase 2C-like protein
23	Avin_26790	2747055..2747411 [+], 357	226944756	hypothetical protein
24	Avin_26800	2747419..2747910 [+], 492	226944757	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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