I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VCM66_A0102 (rluA-2) | 112682..114361 [-], 1680 | 227811730 | ribosomal large subunit pseudouridine synthase A | |
2 | VCM66_A0103 | 115133..115417 [+], 285 | 227811731 | hypothetical protein | PAAR |
3 | VCM66_A0104 | 115362..116405 [+], 1044 | 227811732 | hypothetical protein | |
4 | VCM66_A0105 | 116837..117343 [+], 507 | 227811733 | hypothetical protein | TssB |
5 | VCM66_A0106 | 117384..118862 [+], 1479 | 227811734 | hypothetical protein | TssC |
6 | VCM66_A0107 | 118865..119302 [+], 438 | 227811735 | hypothetical protein | TssE |
7 | VCM66_A0108 | 119308..121077 [+], 1770 | 227811736 | hypothetical protein | TssF |
8 | VCM66_A0109 | 121041..122057 [+], 1017 | 227811737 | hypothetical protein | TssG |
9 | VCM66_A0110 | 122060..123547 [+], 1488 | 227811738 | hypothetical protein | Fha |
10 | VCM66_A0111 | 123550..124026 [+], 477 | 227811739 | hypothetical protein | TssJ |
11 | VCM66_A0112 | 124033..125367 [+], 1335 | 227811740 | hypothetical protein | TssK |
12 | VCM66_A0113 | 125370..126143 [+], 774 | 227811741 | hypothetical protein | TssL |
13 | VCM66_A0114 (clpB-2) | 126169..128778 [+], 2610 | 227811742 | clpB protein | TssH |
14 | VCM66_A0115 | 128781..130373 [+], 1593 | 227811743 | sigma-54 dependent transcriptional regulator | VasH |
15 | VCM66_A0116 | 130343..131026 [+], 684 | 227811744 | hypothetical protein | VCA0118 |
16 | VCM66_A0117 | 131036..132445 [+], 1410 | 227811745 | hypothetical protein | TssA |
17 | VCM66_A0118 | 132461..136006 [+], 3546 | 227811746 | IcmF-related protein | TssM |
18 | VCM66_A0119 | 136054..137319 [+], 1266 | 227811747 | hypothetical protein | TssA |
19 | VCM66_A0120 | 137370..137612 [+], 243 | 227811748 | hypothetical protein | |
20 | VCM66_A0121 (vgrG-3) | 137572..140625 [+], 3054 | 227811749 | vgrG protein | TssI |
21 | VCM66_A0122 | 140622..140990 [+], 369 | 227811750 | hypothetical protein | TsiV3 (i) |
22 | VCM66_A0123 | 141138..141398 [-], 261 | 227811751 | hypothetical protein | |
23 | VCM66_A0124 | 141373..141582 [+], 210 | 227811752 | hypothetical protein | |
24 | VCM66_A0125 (rbsD) | 141631..142101 [+], 471 | 227811753 | D-ribose pyranase | |
25 | VCM66_A0126 (rbsA) | 142128..143630 [+], 1503 | 227811754 | D-ribose transporter ATP binding protein | |
26 | VCM66_A0127 (rbsC) | 143627..144628 [+], 1002 | 227811755 | ribose ABC transporter permease protein | |
27 | VCM66_A0128 (rbsB) | 144683..145567 [+], 885 | 227811756 | D-ribose transporter subunit RbsB | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.