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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VCD_000116 | 127946..128830 [-], 885 | 229605176 | D-ribose transporter subunit RbsB | |
2 | VCD_000117 (rbsC) | 128885..129886 [-], 1002 | 229605177 | ribose ABC transporter permease protein | |
3 | VCD_000118 | 129883..131385 [-], 1503 | 229605178 | D-ribose transporter ATP binding protein | |
4 | VCD_000119 | 131412..131882 [-], 471 | 229605179 | D-ribose pyranase | |
5 | VCD_000120 | 131883..132014 [+], 132 | 229605180 | hypothetical protein | |
6 | VCD_000121 | 132115..132375 [+], 261 | 229605181 | hypothetical protein | |
7 | VCD_000122 | 132888..135941 [-], 3054 | 229605182 | VgrG protein | TssI |
8 | VCD_000123 | 136194..137459 [-], 1266 | 229605183 | type VI secretion-related protein VasL | TssA |
9 | VCD_000124 | 137507..141052 [-], 3546 | 229605184 | IcmF-related protein | TssM |
10 | VCD_000125 | 141068..142477 [-], 1410 | 229605185 | hypothetical protein | TssA |
11 | VCD_000126 | 142487..143170 [-], 684 | 229605186 | type VI secretion protein VasI | VCA0118 |
12 | VCD_000127 | 143140..144732 [-], 1593 | 229605187 | sigma-54 dependent transcriptional regulator | VasH |
13 | VCD_000128 | 144735..147344 [-], 2610 | 229605188 | ClpB protein | TssH |
14 | VCD_000129 | 147370..148143 [-], 774 | 229605189 | ImpK/VasF outer membrane protein | TssL |
15 | VCD_000130 | 148146..149480 [-], 1335 | 229605190 | hypothetical protein | TssK |
16 | VCD_000131 | 149487..149963 [-], 477 | 229605191 | type VI secretion lipoprotein/VasD | TssJ |
17 | VCD_000132 | 149966..151453 [-], 1488 | 229605192 | hypothetical protein | Fha |
18 | VCD_000133 | 151456..152472 [-], 1017 | 229605193 | hypothetical protein | TssG |
19 | VCD_000134 | 152436..154205 [-], 1770 | 229605194 | protein ImpG/VasA | TssF |
20 | VCD_000135 | 154211..154648 [-], 438 | 229605195 | hypothetical protein | TssE |
21 | VCD_000136 | 154651..156129 [-], 1479 | 229605196 | hypothetical protein | TssC |
22 | VCD_000137 | 156170..156676 [-], 507 | 229605197 | hypothetical protein | TssB |
23 | VCD_000138 | 157108..158103 [-], 996 | 229605198 | hypothetical protein | |
24 | VCD_000139 | 158096..158380 [-], 285 | 229605199 | uropathogenic specific protein | PAAR |
25 | VCD_000140 | 159119..160831 [+], 1713 | 229605200 | pseudouridylate synthase LSU rRNA-specific | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein