I. Summary

SecReT6 ID	338
Strain	Burkholderia glumae BGR1
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_012721
Location	154493..188085
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	2	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	bglu_2g01360	149529..150077 [+], 549	238023627	Fimbrial protein
2	bglu_2g01370	150173..150952 [+], 780	238023628	Pili assembly chaperone
3	bglu_2g01380	151021..153837 [+], 2817	238023629	P pilus assembly protein porin PapC
4	bglu_2g01390	153938..154474 [+], 537	238023630	P pilus assembly protein, pilin FimA
5	bglu_2g01400	154493..155251 [+], 759	238023631	DotU family type IV / VI secretion system protein	TssL
6	bglu_2g01410	155248..156957 [+], 1710	238023632	outer membrane protein	TagL
7	bglu_2g01420	157164..157697 [+], 534	238023633	type VI secretion protein	TssB
8	bglu_2g01430	157775..159277 [+], 1503	238023634	EvpB family type VI secretion protein	TssC
9	bglu_2g01440	159409..159891 [+], 483	238023635	type VI secretion system effector	TssD
10	bglu_2g01450	160040..160594 [+], 555	238023636	type VI secretion lipoprotein	TssJ
11	bglu_2g01460	160591..161940 [+], 1350	238023637	type VI secretion protein	TssK
12	bglu_2g01470	161937..163253 [+], 1317	238023638	hypothetical protein	TssL
13	bglu_2g01480	163266..167363 [+], 4098	238023639	type VI secretion protein IcmF	TssM
14	bglu_2g01490	167381..169438 [+], 2058	238023640	ImpA family type VI secretion-associated protein	TssI
15	bglu_2g01500	169629..172157 [+], 2529	238023641	ImpA family type VI secretion-associated protein	TssI
16	bglu_2g01510	172236..172499 [+], 264	238023642	Rhs family protein	PAAR
17	bglu_2g01520	172584..175994 [+], 3411	238023643	Rhs family protein
18	bglu_2g01530	175899..177299 [-], 1401	238023644	hypothetical protein
19	bglu_2g01540	177345..178352 [-], 1008	238023645	Fimbrial protein
20	bglu_2g01550	178418..179482 [-], 1065	238023646	type VI secretion-associated protein, ImpA family	TssA
21	bglu_2g01560	179501..180571 [-], 1071	238023647	type VI secretion protein	TssG
22	bglu_2g01570	180568..182448 [-], 1881	238023648	type VI secretion protein	TssF
23	bglu_2g01580	182450..182968 [-], 519	238023649	type VI secretion system lysozyme-like protein	TssE
24	bglu_2g01590	182965..183798 [-], 834	238023650	Virulence protein, SciE type	TagJ
25	bglu_2g01600	183782..184969 [-], 1188	238023651	hypothetical protein
26	bglu_2g01610	185284..188085 [+], 2802	238023652	type VI secretion ATPase, ClpV1 family	TssH
27	bglu_2g01620	188400..190721 [+], 2322	238023653	two-component system sensor-response regulator hybrid protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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