I. Summary

SecReT6 ID	339
Strain	Burkholderia glumae BGR1
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_012721
Location	245401..260691
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	0	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	bglu_2g02080	240629..241309 [-], 681	238023685	hypothetical protein
2	bglu_2g02090	242081..243724 [+], 1644	238023686	methyl-accepting chemotaxis sensory transducer
3	bglu_2g02120	245401..245859 [+], 459	238023687	type VI secretion protein	TssB
4	bglu_2g02130	245902..247434 [+], 1533	238023688	EvpB family type VI secretion protein	TssC
5	bglu_2g02140	247532..249883 [+], 2352	238023689	ImpA family type VI secretion-associated protein	TssI
6	bglu_2g02150	249883..250863 [+], 981	238023690	hypothetical protein
7	bglu_2g02160	250866..251663 [+], 798	238023691	hypothetical protein
8	bglu_2g02170	251656..253911 [+], 2256	238023692	hypothetical protein
9	bglu_2g02180	253964..255535 [+], 1572	238023693	hypothetical protein	PAAR
10	bglu_2g02190	255623..255880 [+], 258	238023694	PAAR repeat-containing protein	PAAR
11	bglu_2g02200	255884..257173 [+], 1290	238023695	hypothetical protein
12	bglu_2g02210	257170..260691 [+], 3522	238023696	ImcF domain-containing protein	TssM
13	bglu_2g02230	260910..262055 [-], 1146	238023697	diguanylate cyclase
14	bglu_2g02240	262748..263323 [-], 576	238023698	pyridoxamine 5'-phosphate oxidase family protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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