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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | y3651 (tbpA) | 4051616..4052608 [+], 993 | 161484745 | thiamine transporter substrate binding subunit | |
2 | y3652 (thiP) | 4052572..4054191 [+], 1620 | 22127526 | thiamine transporter membrane protein | |
3 | y3653 (thiQ) | 4054178..4054888 [+], 711 | 229013123 | thiamine transporter ATP-binding subunit | |
4 | y3654 | 4054957..4055724 [-], 768 | 22127528 | hypothetical protein | |
5 | y3655 (polB) | 4055920..4058289 [+], 2370 | 22127529 | DNA polymerase II | |
6 | y3656 (hepA) | 4058750..4061656 [+], 2907 | 22127530 | ATP-dependent helicase HepA | |
7 | y3657 | 4061912..4062271 [-], 360 | 22127531 | hypothetical protein | |
8 | y3658 | 4062287..4065781 [-], 3495 | 22127532 | hypothetical protein | TssM |
9 | y3659 | 4065790..4067427 [-], 1638 | 22127533 | hypothetical protein | TssL |
10 | y3660 | 4067397..4068770 [-], 1374 | 22127534 | hypothetical protein | TssK |
11 | y3661 | 4068872..4069246 [-], 375 | 22127535 | lipoprotein | TssJ |
12 | y3662 | 4069356..4069721 [-], 366 | 22127536 | hypothetical protein | PAAR |
13 | y3663 | 4069727..4070344 [-], 618 | 22127537 | hypothetical protein | |
14 | y3664 | 4070337..4071440 [-], 1104 | 22127538 | hypothetical protein | |
15 | y3665 | 4071466..4073685 [-], 2220 | 22127539 | hypothetical protein | |
16 | y3668 | 4073698..4076046 [-], 2349 | 22127540 | hypothetical protein | TssI |
17 | y3669 | 4076150..4078753 [-], 2604 | 22127543 | ATP-dependent protease | TssH |
18 | y3670 | 4078756..4079778 [-], 1023 | 22127544 | hypothetical protein | TssG |
19 | y3671 | 4079732..4081576 [-], 1845 | 22127545 | hypothetical protein | TssF |
20 | y3672 | 4081609..4082052 [-], 444 | 22127546 | hypothetical protein | TssE |
21 | y3673 | 4082126..4082644 [-], 519 | 22127547 | hypothetical protein | TssD |
22 | y3674 | 4082807..4084318 [-], 1512 | 22127548 | hypothetical protein | TssC |
23 | y3675 | 4084318..4084878 [-], 561 | 22127549 | hypothetical protein | TssB |
24 | y3676 | 4084889..4085902 [-], 1014 | 22127550 | hypothetical protein | TssA |
25 | y3677 | 4086232..4086975 [+], 744 | 22127551 | hypothetical protein | |
26 | y3678 | 4088198..4088818 [+], 621 | 22127552 | ribosomal large subunit pseudouridine synthase A | |
27 | y3679 (djlA) | 4089116..4089949 [-], 834 | 22127553 | Dna-J like membrane chaperone protein | |
28 | y3680 (imp) | 4090134..4092476 [+], 2343 | 161484744 | organic solvent tolerance protein | |
29 | y3681 (surA) | 4092544..4093848 [+], 1305 | 22127555 | peptidyl-prolyl cis-trans isomerase SurA | |
30 | y3682 (pdxA) | 4093820..4094827 [+], 1008 | 22127556 | 4-hydroxythreonine-4-phosphate dehydrogenase | |
31 | y3683 (ksgA) | 4094820..4095638 [+], 819 | 22127557 | dimethyladenosine transferase | |
32 | y3684 (apaG) | 4095652..4096029 [+], 378 | 22127558 | ApaG | |
33 | y3685 (apaH) | 4096046..4096915 [+], 870 | 22127559 | diadenosine tetraphosphatase | |
34 | y3686 | 4097005..4097469 [-], 465 | 22127560 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein