I. Summary

SecReT6 ID	342
Strain	Burkholderia glumae BGR1
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_012721
Location	1382281..1422638
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	bglu_2g10800	1378589..1380013 [+], 1425	238024482	hypothetical protein
2	bglu_2g10820	1380562..1381587 [+], 1026	238024483	putative oxidoreductase, MocA
3	bglu_2g10830	1382281..1385334 [+], 3054	238024484	Rhs element Vgr protein	TssI
4	bglu_2g10840	1385927..1387738 [+], 1812	238024485	putative LysM domain-containing protein
5	bglu_2g10850	1387725..1388255 [+], 531	238024486	hypothetical protein
6	bglu_2g10860	1388418..1388756 [+], 339	238024487	hypothetical protein
7	bglu_2g10870	1388807..1389592 [-], 786	238024488	hypothetical protein
8	bglu_2g10880	1389700..1390335 [-], 636	238024489	HAD superfamily hydrolase
9	bglu_2g10890	1390728..1391885 [-], 1158	238024490	alcohol dehydrogenase GroES domain-containing protein
10	bglu_2g10910	1393584..1394141 [-], 558	238024491	type VI secretion lipoprotein	TssJ
11	bglu_2g10920	1394290..1395411 [-], 1122	238024492	type VI secretion protein	TssG
12	bglu_2g10930	1395408..1397222 [-], 1815	238024493	type VI secretion protein	TssF
13	bglu_2g10940	1397235..1398821 [-], 1587	238024494	type VI secretion-associated protein	TssA
14	bglu_2g10950	1398818..1402342 [-], 3525	238024495	ImcF domain-containing protein	TssM
15	bglu_2g10990	1404933..1405184 [-], 252	238024496	PAAR repeat-containing protein	PAAR
16	bglu_2g11000	1405236..1405982 [-], 747	238024497	hypothetical protein
17	bglu_2g11010	1405979..1408828 [-], 2850	238024498	hypothetical protein
18	bglu_2g11020	1408880..1409833 [-], 954	238024499	hypothetical protein
19	bglu_2g11030	1409841..1412201 [-], 2361	238024500	Htype VI secretion system Vgr family protein	TssI
20	bglu_2g11040	1412299..1413831 [-], 1533	238024501	EvpB family type VI secretion protein	TssC
21	bglu_2g11050	1413874..1414386 [-], 513	238024502	type VI secretion protein	TssB
22	bglu_2g11060	1414882..1416234 [+], 1353	238024503	type VI secretion protein	TssK
23	bglu_2g11070	1416231..1416962 [+], 732	238024504	DotU family type IV / VI secretion system protein	TssL
24	bglu_2g11080	1416959..1418767 [+], 1809	238024505	OmpA/MotB domain-containing protein	TagL
25	bglu_2g11090	1418865..1419350 [+], 486	238024506	type VI secretion system effector	TssD
26	bglu_2g11100	1419488..1422196 [+], 2709	238024507	type VI secretion ATPase, ClpV1 family	TssH
27	bglu_2g11110	1422210..1422638 [+], 429	238024508	type VI secretion system lysozyme-like protein	TssE
28	bglu_2g11120	1422882..1423388 [+], 507	238024509	hypothetical protein
29	bglu_2g11130	1423466..1424815 [-], 1350	238024510	hypothetical protein
30	bglu_2g11140	1425483..1427606 [+], 2124	238024511	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	bglu_2g11090	1418865..1419350 [+], 486	238024506	type VI secretion system effector	EC042_4529

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Proteins        Genes

N/A

N/A