I. Summary

SecReT6 ID	343
Strain	Burkholderia glumae BGR1
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_012724
Location	397352..417437
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

12

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	bglu_1g03840	395986..397173 [+], 1188	238026056	diguanylate cyclase
2	bglu_1g03850	397352..398143 [-], 792	238026057	OmpA family protein	TssL
3	bglu_1g03860	398140..399486 [-], 1347	238026058	type VI secretion system protein TssK	TssK
4	bglu_1g03870	399588..400205 [-], 618	238026059	type VI secretion system protein TssJ	TssJ
5	bglu_1g03880	400575..401219 [+], 645	238026060	TPR repeat-containing protein
6	bglu_1g03890	401263..401802 [+], 540	238026061	type VI secretion system protein TssB	TssB
7	bglu_1g03900	401817..403307 [+], 1491	238026062	type VI secretion system protein TssC	TssC
8	bglu_1g03910	403385..403888 [+], 504	238026063	type VI secretion system protein TssD	TssD
9	bglu_1g03920	403965..404447 [+], 483	238026064	type VI secretion system protein TssE	TssE
10	bglu_1g03930	404540..406378 [+], 1839	238026065	type VI secretion system protein TssF	TssF
11	bglu_1g03940	406342..407439 [+], 1098	238026066	type VI secretion system protein TssG	TssG
12	bglu_1g03950	407505..410174 [+], 2670	238026067	type VI secretion system protein TssH	TssH
13	bglu_1g03960	410265..411407 [+], 1143	238026068	type VI secretion system protein TssA	TssA
14	bglu_1g03970	411501..412568 [-], 1068	238026069	OmpA/MotB	TagL
15	bglu_1g03980	412573..413565 [-], 993	238026070	type VI secretion-associated protein
16	bglu_1g03990	413562..417437 [-], 3876	238026071	type VI secretion protein IcmF	TssM
17	bglu_1g04000	417703..418554 [-], 852	238026072	peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins
18	bglu_1g04010	418678..419637 [+], 960	238026073	hypothetical protein
19	bglu_1g04020	420035..421057 [+], 1023	238026074	Mg2+/Co2+ transporter
20	bglu_1g04030	421130..421282 [-], 153	238026075	XapX domain-containing protein
21	bglu_1g04040	421324..422301 [-], 978	238026076	zinc-containing alcohol dehydrogenase superfamily

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

BCAL0343

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	bglu_1g03910	403385..403888 [+], 504	238026063	type VI secretion system protein TssD	BCAL0343

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Proteins        Genes

N/A

N/A