I. Summary

SecReT6 ID	347
Strain	Variovorax paradoxus S110
Replicon	chromosome I [Browse all T6SS(s) in this replicon]
Accession	NC_012791
Location	199429..228629
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Vapar_0191	198109..199296 [+], 1188	239813210	fumarylacetoacetate (FAA) hydrolase
2	Vapar_0192	199429..200520 [+], 1092	239813211	ImpA family type VI secretion-associated protein	TssA
3	Vapar_0193	200601..201170 [+], 570	239813212	type VI secretion protein	TssB
4	Vapar_0194	201189..202697 [+], 1509	239813213	EvpB family type VI secretion protein	TssC
5	Vapar_0195	202747..203229 [+], 483	239813214	hypothetical protein	TssD
6	Vapar_0196	203343..204209 [+], 867	239813215	virulence protein SciE type	TagJ
7	Vapar_0197	204239..204766 [+], 528	239813216	type VI secretion system lysozyme-like protein	TssE
8	Vapar_0198	204767..206638 [+], 1872	239813217	type VI secretion protein	TssF
9	Vapar_0199	206635..207801 [+], 1167	239813218	type VI secretion protein	TssG
10	Vapar_0200	207798..210524 [+], 2727	239813219	type VI secretion ATPase, ClpV1 family	TssH
11	Vapar_0201	210545..212878 [+], 2334	239813220	type VI secretion system Vgr family protein	TssI
12	Vapar_0202	213018..213347 [+], 330	239813221	hypothetical protein
13	Vapar_0203	213347..216007 [+], 2661	239813222	pentapeptide repeat-containing protein
14	Vapar_0204	216004..217080 [+], 1077	239813223	pentapeptide repeat-containing protein
15	Vapar_0205	217178..217798 [+], 621	239813224	hypothetical protein
16	Vapar_0206	217824..218210 [+], 387	239813225	hypothetical protein
17	Vapar_0207	218230..219039 [-], 810	239813226	protein serine/threonine phosphatase
18	Vapar_0208	219032..220969 [-], 1938	239813227	FHA domain containing protein	Fha
19	Vapar_0209	221013..221417 [-], 405	239813228	hypothetical protein
20	Vapar_0210	221594..222064 [+], 471	239813229	type VI secretion lipoprotein	TssJ
21	Vapar_0211	222227..223603 [+], 1377	239813230	type VI secretion protein	TssK
22	Vapar_0212	223612..224994 [+], 1383	239813231	hypothetical protein	TssL
23	Vapar_0213	224994..228629 [+], 3636	239813232	type VI secretion protein IcmF	TssM
24	Vapar_0214	228631..229356 [+], 726	239813233	type VI secretion-associated protein
25	Vapar_0215	229388..231559 [+], 2172	239813234	serine/threonine protein kinase
26	Vapar_0216	231588..233141 [-], 1554	239813235	Mg chelatase subunit ChlI

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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