I. Summary
SecReT6 ID348 insolico
StrainVariovorax paradoxus S110
Repliconchromosome I [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Vapar_0510558821..560710 [-], 1890239813529histidine kinase 
2Vapar_0511560778..560870 [-], 93239813530hypothetical protein 
3Vapar_0512560987..561997 [+], 1011239813531phosphonate ABC transporter periplasmic phosphonate-binding protein 
4Vapar_0513562012..563070 [+], 1059239813532phosphonate ABC transporter periplasmic phosphonate-binding protein 
5Vapar_0514563214..564545 [+], 1332239813533type VI secretion protein  TssK
6Vapar_0515564578..565906 [+], 1329239813534DotU family type IV/VI secretion system protein  TssL
7Vapar_0516565903..569502 [+], 3600239813535type VI secretion protein IcmF  TssM
8Vapar_0517569499..570125 [+], 627239813536type VI secretion-associated protein 
9Vapar_0518570122..570748 [+], 627239813537hypothetical protein 
10Vapar_0519570745..572664 [+], 1920239813538serine/threonine protein kinase 
11Vapar_0520572719..574323 [+], 16052398135393D domain-containing protein 
12Vapar_0521574429..575178 [+], 750239813540hypothetical protein 
13Vapar_0522575207..576355 [+], 1149239813541hypothetical protein 
14Vapar_0523576526..578472 [+], 1947239813542peptidase C14 caspase catalytic subunit p20 
15Vapar_0524578507..579064 [+], 558239813543hypothetical protein 
16Vapar_0525579066..579902 [+], 837239813544virulence protein SciE type  TagJ
17Vapar_0526579905..580420 [+], 516239813545type VI secretion system lysozyme-like protein  TssE
18Vapar_0527580428..582320 [+], 1893239813546type VI secretion protein  TssF
19Vapar_0528582296..583375 [+], 1080239813547type VI secretion protein  TssG
20Vapar_0529583372..584706 [+], 1335239813548type 11 methyltransferase 
21Vapar_0530584776..587505 [+], 2730239813549type VI secretion ATPase, ClpV1 family  TssH
22Vapar_0531587530..590541 [+], 3012239813550type VI secretion system Vgr family protein  TssI
23Vapar_0532590557..593169 [+], 2613239813551pentapeptide repeat-containing protein 
24Vapar_0533593171..594238 [+], 1068239813552pentapeptide repeat-containing protein 
25Vapar_0534594306..594992 [+], 687239813553hypothetical protein 
26Vapar_0535595005..595400 [+], 396239813554hypothetical protein 
27Vapar_0536595488..597866 [+], 2379239813555type VI secretion system Vgr family protein  TssI
28Vapar_0537597893..598375 [+], 483239813556hypothetical protein 
29Vapar_0538598395..599516 [+], 1122239813557hypothetical protein 
30Vapar_0539599513..600544 [+], 10322398135583-oxoacyl-(acyl carrier protein) synthase 
31Vapar_0540600541..601710 [+], 1170239813559hypothetical protein 
32Vapar_0541601887..602639 [+], 753239813560beta-propeller repeat-containing protein 
33Vapar_0542602654..603916 [+], 1263239813561hypothetical protein 
34Vapar_0543603919..604089 [+], 171239813562hypothetical protein 
35Vapar_0544604203..605867 [+], 1665239813563FHA domain containing protein  Fha
36Vapar_0545605923..606762 [+], 840239813564protein serine/threonine phosphatase 
37Vapar_0546606789..607328 [-], 540239813565hypothetical protein 
38Vapar_0547607356..607916 [-], 561239813566hypothetical protein 
39Vapar_0548607989..608471 [-], 483239813567hypothetical protein  TssD
40Vapar_0549608618..610111 [-], 1494239813568EvpB family type VI secretion protein  TssC
41Vapar_0550610153..610671 [-], 519239813569type VI secretion protein  TssB
42Vapar_0551610742..611773 [-], 1032239813570ImpA family type VI secretion-associated protein  TssA
43Vapar_0552611845..612360 [+], 516239813571type VI secretion lipoprotein  TssJ
44Vapar_0553612383..613513 [-], 1131239813572hypothetical protein  TssM
45Vapar_0554613524..614849 [-], 1326239813573hypothetical protein 
46Vapar_0555615112..615795 [+], 684239813574two component LuxR family transcriptional regulator 
47Vapar_0556615810..617141 [-], 1332239813575FAD dependent oxidoreductase 
48Vapar_0557617178..617462 [-], 285239813576hypothetical protein 
49Vapar_0558617453..618451 [-], 999239813577AIR synthase-like protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.