 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PFL_RS30780 | 6893219..6894619 [+], 1401 | 499376662 | HDOD domain-containing protein | |
2 | PFL_RS30785 | 6894678..6895061 [-], 384 | 505450373 | hypothetical protein | |
3 | PFL_RS30790 | 6895202..6896131 [-], 930 | 499376664 | hypothetical protein | |
4 | PFL_RS30795 | 6896215..6897927 [-], 1713 | 499376665 | SUMF1/EgtB/PvdO family nonheme iron enzyme | |
5 | PFL_RS30800 | 6897920..6899122 [-], 1203 | 499376666 | ABC transporter permease | |
6 | PFL_RS30805 | 6899122..6899838 [-], 717 | 499376667 | ABC transporter ATP-binding protein | |
7 | PFL_RS30810 | 6899838..6902921 [-], 3084 | 499376668 | protein kinase | |
8 | PFL_RS30815 | 6902924..6903658 [-], 735 | 499376669 | serine/threonine-protein phosphatase | |
9 | PFL_RS30820 (tagF) | 6903659..6904312 [-], 654 | 499376670 | type VI secretion system-associated protein TagF | |
10 | PFL_RS30825 (tssM) | 6904309..6907815 [-], 3507 | 499376671 | type VI secretion system membrane subunit TssM | |
11 | PFL_RS30830 | 6907812..6909137 [-], 1326 | 499376672 | DotU family type VI secretion system protein | |
12 | PFL_RS30835 (tssK) | 6909144..6910478 [-], 1335 | 499376673 | type VI secretion system baseplate subunit TssK | |
13 | PFL_RS30840 (tssJ) | 6910494..6911000 [-], 507 | 499376674 | type VI secretion system lipoprotein TssJ | |
14 | PFL_RS30845 (tagH) | 6911065..6912549 [-], 1485 | 499376675 | type VI secretion system-associated FHA domain protein TagH | |
15 | PFL_RS30850 (tssA) | 6912942..6913961 [+], 1020 | 499376676 | type VI secretion system protein TssA | |
16 | PFL_RS30855 (tssB) | 6914043..6914558 [+], 516 | 499376677 | type VI secretion system contractile sheath small subunit | |
17 | PFL_RS30860 (tssC) | 6914575..6916068 [+], 1494 | 499376678 | type VI secretion system contractile sheath large subunit | |
18 | PFL_RS30865 | 6916187..6916675 [+], 489 | 499376679 | type VI secretion system tube protein Hcp | |
19 | PFL_RS30870 (tssE) | 6916836..6917351 [+], 516 | 499376680 | type VI secretion system baseplate subunit TssE | |
20 | PFL_RS30875 (tssF) | 6917348..6919207 [+], 1860 | 499376681 | type VI secretion system baseplate subunit TssF | |
21 | PFL_RS30880 (tssG) | 6919171..6920223 [+], 1053 | 499376682 | type VI secretion system baseplate subunit TssG | |
22 | PFL_RS30885 (tssH) | 6920216..6922891 [+], 2676 | 499376683 | type VI secretion system ATPase TssH | |
23 | PFL_RS30890 | 6923022..6924959 [+], 1938 | 499376684 | type VI secretion system tip protein VgrG | |
24 | PFL_RS30895 | 6924978..6925403 [+], 426 | 499376685 | DUF1795 domain-containing protein | |
25 | PFL_RS30900 | 6925413..6929873 [+], 4461 | 499376686 | RHS domain-containing protein | |
26 | PFL_RS30905 | 6929889..6930515 [+], 627 | 499376687 | hypothetical protein | |
27 | PFL_RS30910 | 6930535..6930798 [-], 264 | 751653559 | hypothetical protein | |
28 | PFL_RS30915 | 6930853..6931287 [-], 435 | 499376689 | DcrB-related protein | |
29 | PFL_RS30920 | 6931399..6931770 [-], 372 | 751653563 | hypothetical protein | |
30 | PFL_RS30925 | 6931758..6932282 [-], 525 | 517922938 | hypothetical protein | |
31 | PFL_RS30930 | 6932447..6932722 [-], 276 | 499376691 | HU family DNA-binding protein | |
32 | PFL_RS30935 | 6932912..6934060 [-], 1149 | 499376692 | FAD-dependent oxidoreductase | |
33 | PFL_RS30940 | 6934103..6934270 [-], 168 | 499376693 | rubredoxin | |
34 | PFL_RS30945 | 6934486..6935049 [+], 564 | 499376694 | chorismate lyase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein