I. Summary

SecReT6 ID	354
Strain	Geobacter sp. M21
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_012918
Location	1407063..1425222
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	GM21_1199	1402962..1405850 [+], 2889	253699829	multi-sensor hybrid histidine kinase
2	GM21_1200	1406038..1406538 [-], 501	253699830	molybdopterin-guanine dinucleotide biosynthesis protein B
3	GM21_1201 (tatA)	1406590..1406787 [-], 198	253699831	twin arginine translocase protein A
4	GM21_1202	1407063..1407551 [+], 489	253699832	type VI secretion lipoprotein	TssJ
5	GM21_1203	1407548..1408942 [+], 1395	253699833	type VI secretion protein	TssK
6	GM21_1204	1408963..1409622 [+], 660	253699834	DotU family type IV / VI secretion system protein	TssL
7	GM21_1205	1409638..1413042 [+], 3405	253699835	hypothetical protein	TssM
8	GM21_1206	1413053..1414372 [+], 1320	253699836	type VI secretion-associated protein, ImpA family	TssA
9	GM21_1207	1414396..1414926 [+], 531	253699837	type VI secretion protein	TssB
10	GM21_1208	1414938..1416425 [+], 1488	253699838	type VI secretion protein EvpB	TssC
11	GM21_1209	1416439..1416936 [+], 498	253699839	type VI secretion system effector	TssD
12	GM21_1210	1416981..1417418 [+], 438	253699840	type VI secretion system lysozyme-like protein	TssE
13	GM21_1211	1417426..1419198 [+], 1773	253699841	type VI secretion protein	TssF
14	GM21_1212	1419213..1420247 [+], 1035	253699842	type VI secretion protein	TssG
15	GM21_1213	1420289..1421395 [+], 1107	253699843	hypothetical protein
16	GM21_1214	1421397..1422227 [+], 831	253699844	ankyrin
17	GM21_1215	1422292..1423122 [+], 831	253699845	ankyrin
18	GM21_1216	1423171..1425222 [+], 2052	253699846	ImpA family type VI secretion-associated protein	TssI
19	GM21_1217	1425258..1425791 [+], 534	253699847	hypothetical protein
20	GM21_1218	1425812..1426210 [+], 399	253699848	hypothetical protein
21	GM21_1219	1426388..1427131 [+], 744	253699849	hypothetical protein
22	GM21_1220	1427187..1427477 [+], 291	253699850	hypothetical protein
23	GM21_1221	1427581..1428237 [+], 657	253699851	PA-phosphatase like phosphoesterase
24	GM21_1222	1428491..1428934 [+], 444	253699852	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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