I. Summary
SecReT6 ID356 insolico
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAU_02266 (pvpR)2566435..2567061 [-], 627253989746pvp response regulator 
2PAU_022672567079..2568338 [-], 1260253989747hypothetical protein 
3PAU_022682568403..2570973 [-], 2571253989748ClpA/B-type chaperone  TssH
4PAU_022692570966..2574466 [-], 3501253989749hypothetical protein  TssM
5PAU_022702574482..2575105 [-], 624253989750transmembrane protein  TssL
6PAU_022712575102..2576499 [-], 1398253989751hypothetical protein  TssK
7PAU_022722576505..2577164 [-], 660253989752hypothetical protein  TssJ
8PAU_022732577154..2578272 [-], 1119253989753inner membrane protein  TssA
9PAU_022742578265..2578567 [-], 303253989754hypothetical protein  PAAR
10PAU_022752578564..2579160 [-], 597253989755hypothetical protein 
11PAU_022762579195..2581201 [-], 2007253989756hypothetical protein  TssI
12PAU_022772581224..2582186 [-], 963253989757hypothetical protein  TssG
13PAU_022782582177..2583988 [-], 1812253989758hypothetical protein  TssF
14PAU_022792583990..2584433 [-], 444253989759hypothetical protein  TssE
15PAU_022802584491..2584985 [-], 495253989760hypothetical protein  TssD
16PAU_022812585049..2586530 [-], 1482253989761hypothetical protein  TssC
17PAU_022822586538..2587089 [-], 552253989762hypothetical protein  TssB
18PAU_022832587756..2589015 [-], 1260253989763tail fiber protein from prophage cp-933h 
19PAU_022842589146..2589769 [-], 624253989764tail fiber protein of prophage 
20PAU_02285 (Sc/SvQ)2589772..2590722 [-], 951253989765sc/svq protein 
21PAU_022862591046..2591669 [-], 624253989766tail fiber assembly protein from lambdoid prophage e14 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAU_024142760185..2760670 [+], 486253989894hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes