 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PAU_03783 | 4387661..4390435 [-], 2775 | 253991256 | hypothetical protein | |
2 | PAU_03784 | 4390760..4391152 [+], 393 | 253991257 | hypothetical protein | |
3 | PAU_03785 | 4391166..4391696 [+], 531 | 253991258 | hypothetical protein | TssJ |
4 | PAU_03786 | 4391722..4393071 [+], 1350 | 253991259 | hypothetical protein | TssK |
5 | PAU_03787 | 4393068..4394231 [+], 1164 | 253991260 | outer membrane protein, ompa/motb family | TssL |
6 | PAU_03788 | 4394248..4397805 [+], 3558 | 253991261 | hypothetical protein | TssM |
7 | PAU_03789 | 4397816..4398823 [+], 1008 | 253991262 | hypothetical protein | TssA |
8 | PAU_03790 | 4398923..4399480 [+], 558 | 253991263 | hypothetical protein | TssB |
9 | PAU_03791 | 4399467..4400975 [+], 1509 | 253991264 | hypothetical protein | TssC |
10 | PAU_03792 | 4401008..4401529 [+], 522 | 253991265 | hypothetical protein | TssD |
11 | PAU_03793 | 4401671..4402666 [+], 996 | 253991266 | hypothetical protein | Fha |
12 | PAU_03794 | 4403251..4404222 [-], 972 | 253991267 | transposase | |
13 | PAU_03795 | 4404711..4405106 [-], 396 | 253991268 | transposase | |
14 | PAU_03796 | 4405715..4405867 [+], 153 | 253991269 | hypothetical protein | |
15 | PAU_03797 | 4406267..4406539 [-], 273 | 253991270 | relb antitoxin | |
16 | PAU_03798 | 4406762..4409386 [-], 2625 | 253991271 | hypothetical protein | TssH |
17 | PAU_03799 | 4409439..4410530 [-], 1092 | 253991272 | hypothetical protein | TssG |
18 | PAU_03800 | 4410527..4412395 [-], 1869 | 253991273 | hypothetical protein | TssF |
19 | PAU_03801 | 4412399..4412935 [-], 537 | 253991274 | hypothetical protein | TssE |
20 | PAU_03802 | 4412936..4413571 [-], 636 | 253991275 | hypothetical protein | |
21 | PAU_03803 | 4413616..4414674 [-], 1059 | 253991276 | hypothetical protein | |
22 | PAU_03804 | 4414671..4417217 [-], 2547 | 253991277 | hypothetical protein | |
23 | PAU_03805 | 4417242..4419743 [-], 2502 | 253991278 | hypothetical protein | TssI |
24 | PAU_03806 | 4420026..4420232 [+], 207 | 253991279 | hypothetical protein | |
25 | PAU_03807 | 4420370..4420816 [+], 447 | 253991280 | two-component response regulator | |
26 | PAU_03808 | 4421186..4422109 [-], 924 | 253991281 | hypothetical protein | |
27 | PAU_03809 | 4422106..4423377 [-], 1272 | 253991282 | hypothetical protein | |
28 | PAU_03810 | 4423407..4425812 [-], 2406 | 253991283 | hypothetical protein | |
29 | PAU_03811 | 4425814..4426944 [-], 1131 | 253991284 | hypothetical protein | |
30 | PAU_03812 | 4428702..4429046 [+], 345 | 253991285 | hypothetical protein | |
31 | PAU_03813 | 4429208..4429495 [-], 288 | 253991286 | hypothetical protein | |
32 | PAU_03814 | 4429950..4431320 [-], 1371 | 253991287 | hypothetical protein | TssA |
33 | PAU_03815 | 4431575..4432009 [-], 435 | 253991288 | hypothetical protein | TssE |
34 | PAU_03816 | 4432013..4432486 [-], 474 | 253991289 | hypothetical protein | TssJ |
35 | PAU_03817 | 4432530..4433561 [-], 1032 | 253991290 | hypothetical protein | TssG |
36 | PAU_03818 | 4433561..4435321 [-], 1761 | 253991291 | hypothetical protein | TssF |
37 | PAU_03819 | 4435406..4437007 [-], 1602 | 253991292 | hypothetical protein | TssA |
38 | PAU_03820 | 4437011..4440307 [-], 3297 | 253991293 | hypothetical protein | TssM |
39 | PAU_03821 | 4440300..4441475 [-], 1176 | 253991294 | hypothetical protein | |
40 | PAU_03822 | 4441481..4441753 [-], 273 | 253991295 | hypothetical protein | PAAR |
41 | PAU_03823 | 4441788..4442549 [-], 762 | 253991296 | membrane protein | |
42 | PAU_03824 | 4442745..4443734 [-], 990 | 253991297 | hypothetical protein | |
43 | PAU_03825 | 4443932..4444690 [-], 759 | 253991298 | membrane protein | |
44 | PAU_03826 | 4444888..4445883 [-], 996 | 253991299 | hypothetical protein | |
45 | PAU_03827 | 4445962..4446963 [-], 1002 | 253991300 | hypothetical protein | |
46 | PAU_03828 | 4447042..4448043 [-], 1002 | 253991301 | hypothetical protein | |
47 | PAU_03829 | 4448040..4450646 [-], 2607 | 253991302 | hypothetical protein | |
48 | PAU_03830 | 4450646..4451686 [-], 1041 | 253991303 | hypothetical protein | |
49 | PAU_03831 | 4451697..4454069 [-], 2373 | 253991304 | hypothetical protein | TssI |
50 | PAU_03832 | 4454078..4456756 [-], 2679 | 253991305 | ClpA/B-type chaperone | TssH |
51 | PAU_03833 | 4456998..4457489 [-], 492 | 253991306 | hypothetical protein | TssD |
52 | PAU_03834 | 4457494..4459227 [-], 1734 | 253991307 | hypothetical protein | TagL |
53 | PAU_03835 | 4459238..4459888 [-], 651 | 253991308 | hypothetical protein | TssL |
54 | PAU_03836 | 4459885..4461246 [-], 1362 | 253991309 | hypothetical protein | TssK |
55 | PAU_03837 | 4461263..4462789 [-], 1527 | 253991310 | hypothetical protein | TssC |
56 | PAU_03838 | 4462838..4463335 [-], 498 | 253991311 | hypothetical protein | TssB |
57 | PAU_03839 | 4463539..4463688 [-], 150 | 253991312 | hypothetical protein | |
58 | PAU_03840 | 4464073..4464513 [-], 441 | 253991313 | hypothetical protein | |
59 | PAU_03841 | 4464744..4465949 [-], 1206 | 253991314 | transmembrane protein | |
60 | PAU_03842 (ydcM) | 4466275..4466787 [+], 513 | 253991315 | is element transposase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein