SecReT6
I. Summary
SecReT6 ID358 insolico
StrainPhotorhabdus asymbiotica subsp. asymbiotica ATCC 43949
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_012962
Location4391166..4463335
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number222232222
ComponentTssGTssJTssKTssM
Number2222
27
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PAU_037834387661..4390435 [-], 2775253991256hypothetical protein 
2PAU_037844390760..4391152 [+], 393253991257hypothetical protein 
3PAU_037854391166..4391696 [+], 531253991258hypothetical protein  TssJ
4PAU_037864391722..4393071 [+], 1350253991259hypothetical protein  TssK
5PAU_037874393068..4394231 [+], 1164253991260outer membrane protein, ompa/motb family  TssL
6PAU_037884394248..4397805 [+], 3558253991261hypothetical protein  TssM
7PAU_037894397816..4398823 [+], 1008253991262hypothetical protein  TssA
8PAU_037904398923..4399480 [+], 558253991263hypothetical protein  TssB
9PAU_037914399467..4400975 [+], 1509253991264hypothetical protein  TssC
10PAU_037924401008..4401529 [+], 522253991265hypothetical protein  TssD
11PAU_037934401671..4402666 [+], 996253991266hypothetical protein  Fha
12PAU_037944403251..4404222 [-], 972253991267transposase 
13PAU_037954404711..4405106 [-], 396253991268transposase 
14PAU_037964405715..4405867 [+], 153253991269hypothetical protein 
15PAU_037974406267..4406539 [-], 273253991270relb antitoxin 
16PAU_037984406762..4409386 [-], 2625253991271hypothetical protein  TssH
17PAU_037994409439..4410530 [-], 1092253991272hypothetical protein  TssG
18PAU_038004410527..4412395 [-], 1869253991273hypothetical protein  TssF
19PAU_038014412399..4412935 [-], 537253991274hypothetical protein  TssE
20PAU_038024412936..4413571 [-], 636253991275hypothetical protein 
21PAU_038034413616..4414674 [-], 1059253991276hypothetical protein 
22PAU_038044414671..4417217 [-], 2547253991277hypothetical protein 
23PAU_038054417242..4419743 [-], 2502253991278hypothetical protein  TssI
24PAU_038064420026..4420232 [+], 207253991279hypothetical protein 
25PAU_038074420370..4420816 [+], 447253991280two-component response regulator 
26PAU_038084421186..4422109 [-], 924253991281hypothetical protein 
27PAU_038094422106..4423377 [-], 1272253991282hypothetical protein 
28PAU_038104423407..4425812 [-], 2406253991283hypothetical protein 
29PAU_038114425814..4426944 [-], 1131253991284hypothetical protein 
30PAU_038124428702..4429046 [+], 345253991285hypothetical protein 
31PAU_038134429208..4429495 [-], 288253991286hypothetical protein 
32PAU_038144429950..4431320 [-], 1371253991287hypothetical protein  TssA
33PAU_038154431575..4432009 [-], 435253991288hypothetical protein  TssE
34PAU_038164432013..4432486 [-], 474253991289hypothetical protein  TssJ
35PAU_038174432530..4433561 [-], 1032253991290hypothetical protein  TssG
36PAU_038184433561..4435321 [-], 1761253991291hypothetical protein  TssF
37PAU_038194435406..4437007 [-], 1602253991292hypothetical protein  TssA
38PAU_038204437011..4440307 [-], 3297253991293hypothetical protein  TssM
39PAU_038214440300..4441475 [-], 1176253991294hypothetical protein 
40PAU_038224441481..4441753 [-], 273253991295hypothetical protein  PAAR
41PAU_038234441788..4442549 [-], 762253991296membrane protein 
42PAU_038244442745..4443734 [-], 990253991297hypothetical protein 
43PAU_038254443932..4444690 [-], 759253991298membrane protein 
44PAU_038264444888..4445883 [-], 996253991299hypothetical protein 
45PAU_038274445962..4446963 [-], 1002253991300hypothetical protein 
46PAU_038284447042..4448043 [-], 1002253991301hypothetical protein 
47PAU_038294448040..4450646 [-], 2607253991302hypothetical protein 
48PAU_038304450646..4451686 [-], 1041253991303hypothetical protein 
49PAU_038314451697..4454069 [-], 2373253991304hypothetical protein  TssI
50PAU_038324454078..4456756 [-], 2679253991305ClpA/B-type chaperone  TssH
51PAU_038334456998..4457489 [-], 492253991306hypothetical protein  TssD
52PAU_038344457494..4459227 [-], 1734253991307hypothetical protein  TagL
53PAU_038354459238..4459888 [-], 651253991308hypothetical protein  TssL
54PAU_038364459885..4461246 [-], 1362253991309hypothetical protein  TssK
55PAU_038374461263..4462789 [-], 1527253991310hypothetical protein  TssC
56PAU_038384462838..4463335 [-], 498253991311hypothetical protein  TssB
57PAU_038394463539..4463688 [-], 150253991312hypothetical protein 
58PAU_038404464073..4464513 [-], 441253991313hypothetical protein 
59PAU_038414464744..4465949 [-], 1206253991314transmembrane protein 
60PAU_03842 (ydcM)4466275..4466787 [+], 513253991315is element transposase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PAU_038334456998..4457489 [-], 492253991306hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU