I. Summary

SecReT6 ID	359
Strain	Teredinibacter turnerae T7901
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_012997
Location	1689583..1720698
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	TERTU_1635	1685189..1685872 [-], 684	254785734	inner membrane protein YccA
2	TERTU_1636	1686037..1686729 [-], 693	254785735	ribonucleotide reductase, subunit alpha
3	TERTU_1637	1686740..1688899 [-], 2160	254785736	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
4	TERTU_1639	1689583..1690065 [+], 483	254785737	type VI secretion system effector, Hcp1 family	TssD
5	TERTU_1640	1690279..1692273 [+], 1995	254785738	type VI secretion system Vgr family protein	TssI
6	TERTU_1641	1692285..1692845 [+], 561	254785739	hypothetical protein
7	TERTU_1642	1692855..1693835 [+], 981	254785740	hypothetical protein
8	TERTU_1643	1693846..1694226 [+], 381	254785741	hypothetical protein
9	TERTU_1644	1694256..1695485 [+], 1230	254785742	hypothetical protein
10	TERTU_1645	1695501..1695794 [-], 294	254785743	hypothetical protein
11	TERTU_1646	1695815..1696363 [-], 549	254785744	hypothetical protein
12	TERTU_1647	1696428..1699229 [-], 2802	254785745	hypothetical protein
13	TERTU_1648	1699226..1700575 [-], 1350	254785746	hypothetical protein
14	TERTU_1649 (clpV)	1700803..1703538 [-], 2736	254785747	type VI secretion ATPase, ClpV1 family	TssH
15	TERTU_1650	1703569..1704684 [-], 1116	254785748	type VI secretion protein	TssG
16	TERTU_1651 (vasA)	1704648..1706483 [-], 1836	254785749	type VI secretion protein	TssF
17	TERTU_1652	1706476..1706973 [-], 498	254785750	type VI secretion system lysozyme-related protein	TssE
18	TERTU_1653	1706985..1708421 [-], 1437	254785751	type VI secretion protein, EvpB/family	TssC
19	TERTU_1654	1708411..1708533 [+], 123	254785752	hypothetical protein
20	TERTU_1656	1708917..1710413 [-], 1497	254785753	type VI secretion protein, EvpB/family	TssC
21	TERTU_1657	1710403..1710924 [-], 522	254785754	type VI secretion protein	TssB
22	TERTU_1658	1710954..1712075 [-], 1122	254785755	type VI secretion-associated protein, ImpA family	TssA
23	TERTU_1660	1712682..1714319 [+], 1638	254785756	type VI secretion system FHA domain-containing protein	Fha
24	TERTU_1661	1714351..1714839 [+], 489	254785757	type VI secretion lipoprotein	TssJ
25	TERTU_1662	1714855..1716189 [+], 1335	254785758	type VI secretion protein	TssK
26	TERTU_1663	1716202..1717110 [+], 909	254785759	type IV / VI secretion system protein, DotU family	TssL
27	TERTU_1664 (icmF)	1717165..1720698 [+], 3534	254785760	type VI secretion protein IcmF	TssM
28	TERTU_1665	1720698..1721462 [+], 765	254785761	type VI secretion-associated protein, BMA_A0400 family
29	TERTU_1666	1721455..1722204 [+], 750	254785762	protein phosphatase 2C domain-containing protein
30	TERTU_1667	1722211..1724004 [+], 1794	254785763	protein kinase
31	TERTU_1668	1724009..1724956 [+], 948	254785764	protein kinase
32	TERTU_1669	1724958..1725200 [+], 243	254785765	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Yang JC et al. (2009). The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms). PLoS One. 4(7):e6085. [PudMed:19568419]

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