I. Summary
SecReT6 ID365 insolico
StrainEscherichia coli O103:H2 str. 12009
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECO103_0207 (yafS)235550..236272 [+], 723260842439S-adenosyl-L-methionine-dependent methyltransferase 
2ECO103_0208 (rnhA)236269..236736 [-], 468260842440ribonuclease HI 
3ECO103_0209 (dnaQ)236801..237532 [+], 732260842441DNA polymerase III, epsilon subunit DnaQ 
4ECO103_0210 (yafT)238073..238858 [+], 786260842442aminopeptidase 
5ECO103_0211 (ykfM)238995..239474 [-], 480260842443hypothetical protein 
6ECO103_0212239484..240398 [-], 915260842444hypothetical protein 
7ECO103_0213240442..240924 [-], 483260842445Hcp-like protein  TssD
8ECO103_0214240948..242300 [-], 1353260842446hypothetical protein  TssA
9ECO103_0215242311..245835 [-], 3525260842447IcmF-like protein  TssM
10ECO103_0216245854..247266 [-], 1413260842448hypothetical protein  TssA
11ECO103_0217247271..248014 [-], 744260842449hypothetical protein 
12ECO103_0218248011..250776 [-], 2766260842450ATP-dependent Clp proteinase ATP-binding chain  TssH
13ECO103_0219250785..251546 [-], 762260842451hypothetical protein  TssL
14ECO103_0220251551..252882 [-], 1332260842452hypothetical protein  TssK
15ECO103_0221252885..253409 [-], 525260842453lipoprotein  TssJ
16ECO103_0222253406..254686 [-], 1281260842454hypothetical protein  Fha
17ECO103_0223254711..255793 [-], 1083260842455hypothetical protein  TssG
18ECO103_0224255757..257607 [-], 1851260842456hypothetical protein  TssF
19ECO103_0225257611..258024 [-], 414260842457hypothetical protein  TssE
20ECO103_0226258031..259506 [-], 1476260842458hypothetical protein  TssC
21ECO103_0227259557..259781 [-], 225260842459hypothetical protein  TssC
22ECO103_0228259816..260316 [-], 501260842460hypothetical protein  TssB
23ECO103_0229261013..261531 [+], 519260842461Hcp-like protein  TssD
24ECO103_0230261741..263882 [+], 2142260842462VgrG protein  TssI
25ECO103_0231263958..268205 [+], 4248260842463fused RhsG core protein with extension/ RhsI core protein  PAAR
26ECO103_0232268189..268671 [+], 483260842464hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECO103_0229261013..261531 [+], 519260842461Hcp-like protein ECA4275

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Proteins        Genes