I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 0 | 1 | 1 | 0 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ECO111_0210 (yafS) | 236476..237198 [+], 723 | 260866356 | putative S-adenosyl-L-methionine-dependent methyltransferase | |
2 | ECO111_0211 (rnhA) | 237195..237662 [-], 468 | 260866357 | ribonuclease HI | |
3 | ECO111_0212 (dnaQ) | 237727..238458 [+], 732 | 260866358 | DNA polymerase III subunit epsilon | |
4 | ECO111_0215 (ykfM) | 239873..240352 [-], 480 | 260866359 | hypothetical protein | |
5 | ECO111_0216 | 240362..241276 [-], 915 | 260866360 | hypothetical protein | |
6 | ECO111_0217 | 241320..241802 [-], 483 | 260866361 | Hcp-like protein | TssD |
7 | ECO111_0218 | 241826..243178 [-], 1353 | 260866362 | hypothetical protein | TssA |
8 | ECO111_0221 | 246731..248143 [-], 1413 | 260866363 | hypothetical protein | TssA |
9 | ECO111_0222 | 248148..248891 [-], 744 | 260866364 | hypothetical protein | |
10 | ECO111_0223 | 248888..251725 [-], 2838 | 260866365 | putative ATP-dependent Clp proteinase ATP-binding chain | TssH |
11 | ECO111_0224 | 251734..252495 [-], 762 | 260866366 | hypothetical protein | TssL |
12 | ECO111_0225 | 252500..253831 [-], 1332 | 260866367 | hypothetical protein | TssK |
13 | ECO111_0226 | 253834..254358 [-], 525 | 260866368 | putative lipoprotein | TssJ |
14 | ECO111_0227 | 254355..255635 [-], 1281 | 260866369 | hypothetical protein | Fha |
15 | ECO111_0230 | 256705..258555 [-], 1851 | 260866370 | hypothetical protein | TssF |
16 | ECO111_0231 | 258559..258972 [-], 414 | 260866371 | hypothetical protein | TssE |
17 | ECO111_0232 | 258979..260454 [-], 1476 | 260866372 | hypothetical protein | TssC |
18 | ECO111_0233 | 260505..260729 [-], 225 | 260866373 | hypothetical protein | TssC |
19 | ECO111_0234 | 260764..261264 [-], 501 | 260866374 | hypothetical protein | TssB |
20 | ECO111_0235 | 261961..262479 [+], 519 | 260866375 | Hcp-like protein | TssD |
21 | ECO111_0236 | 262689..264830 [+], 2142 | 260866376 | VgrG protein | TssI |
22 | ECO111_0237 | 264906..269135 [+], 4230 | 260866377 | fused putative RhsG core protein with extension/putative RhsI core protein | PAAR |
23 | ECO111_0238 | 269119..269601 [+], 483 | 260866378 | hypothetical protein | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.