SecReT6
I. Summary
SecReT6 ID367 insolico
StrainEscherichia coli O111:H- str. 11128
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013364
Location241320..264830
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121211
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ECO111_0210 (yafS)236476..237198 [+], 723260866356putative S-adenosyl-L-methionine-dependent methyltransferase 
2ECO111_0211 (rnhA)237195..237662 [-], 468260866357ribonuclease HI 
3ECO111_0212 (dnaQ)237727..238458 [+], 732260866358DNA polymerase III subunit epsilon 
4ECO111_0215 (ykfM)239873..240352 [-], 480260866359hypothetical protein 
5ECO111_0216240362..241276 [-], 915260866360hypothetical protein 
6ECO111_0217241320..241802 [-], 483260866361Hcp-like protein  TssD
7ECO111_0218241826..243178 [-], 1353260866362hypothetical protein  TssA
8ECO111_0221246731..248143 [-], 1413260866363hypothetical protein  TssA
9ECO111_0222248148..248891 [-], 744260866364hypothetical protein 
10ECO111_0223248888..251725 [-], 2838260866365putative ATP-dependent Clp proteinase ATP-binding chain  TssH
11ECO111_0224251734..252495 [-], 762260866366hypothetical protein  TssL
12ECO111_0225252500..253831 [-], 1332260866367hypothetical protein  TssK
13ECO111_0226253834..254358 [-], 525260866368putative lipoprotein  TssJ
14ECO111_0227254355..255635 [-], 1281260866369hypothetical protein  Fha
15ECO111_0230256705..258555 [-], 1851260866370hypothetical protein  TssF
16ECO111_0231258559..258972 [-], 414260866371hypothetical protein  TssE
17ECO111_0232258979..260454 [-], 1476260866372hypothetical protein  TssC
18ECO111_0233260505..260729 [-], 225260866373hypothetical protein  TssC
19ECO111_0234260764..261264 [-], 501260866374hypothetical protein  TssB
20ECO111_0235261961..262479 [+], 519260866375Hcp-like protein  TssD
21ECO111_0236262689..264830 [+], 2142260866376VgrG protein  TssI
22ECO111_0237264906..269135 [+], 4230260866377fused putative RhsG core protein with extension/putative RhsI core protein  PAAR
23ECO111_0238269119..269601 [+], 483260866378hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1ECO111_0235261961..262479 [+], 519260866375Hcp-like protein ECA4275

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Proteins        Genes
N/A
N/A