 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | C_RS16000 (fucU) | 3213754..3214176 [+], 423 | 446843584 | L-fucose mutarotase | |
2 | C_RS16005 (fucR) | 3214234..3214965 [+], 732 | 485663863 | L-fucose operon activator | |
3 | C_RS16010 (rlmM) | 3215009..3216109 [-], 1101 | 446968274 | 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM | |
4 | C_RS16015 | 3216102..3216497 [-], 396 | 446126055 | DUF423 domain-containing protein | |
5 | C_RS16020 (gcvA) | 3216516..3217433 [-], 918 | 445966546 | glycine cleavage system transcriptional regulator GcvA | |
6 | C_RS16025 | 3217784..3218011 [-], 228 | 446673052 | YgdI/YgdR family lipoprotein | |
7 | C_RS16030 (csdA) | 3218203..3219408 [+], 1206 | 485693493 | cysteine desulfurase CsdA | |
8 | C_RS16035 (csdE) | 3219408..3219851 [+], 444 | 446106417 | cysteine desulfurase sulfur acceptor subunit CsdE | |
9 | C_RS16040 (tcdA) | 3219902..3220708 [-], 807 | 446039856 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | |
10 | C_RS16045 (mltA) | 3220785..3221882 [-], 1098 | 446601304 | murein transglycosylase A | |
11 | C_RS16065 (tssB) | 3223023..3223523 [+], 501 | 485828321 | type VI secretion system contractile sheath small subunit | |
12 | C_RS16070 (tssC) | 3223582..3225120 [+], 1539 | 485718542 | type VI secretion system contractile sheath large subunit | |
13 | C_RS16075 (tssK) | 3225140..3226477 [+], 1338 | 446609343 | type VI secretion system baseplate subunit TssK | |
14 | C_RS16080 | 3226474..3227139 [+], 666 | 446634969 | type VI secretion system protein TssL, short form | |
15 | C_RS16085 | 3227152..3228804 [+], 1653 | 447169270 | OmpA family protein | |
16 | C_RS16090 | 3228862..3229353 [+], 492 | 446919812 | Hcp family type VI secretion system effector | TssD |
17 | C_RS16095 (tssH) | 3229545..3232181 [+], 2637 | 446069484 | type VI secretion system ATPase TssH | |
18 | C_RS16100 (vgrG) | 3232193..3234655 [+], 2463 | 486165960 | type VI secretion system tip protein VgrG | |
19 | C_RS16105 | 3234652..3235494 [+], 843 | 485663865 | hypothetical protein | |
20 | C_RS16110 | 3235491..3237467 [+], 1977 | 446028334 | hypothetical protein | |
21 | C_RS16115 | 3237489..3237749 [+], 261 | 485828323 | PAAR domain-containing protein | |
22 | C_RS16120 | 3237749..3239182 [+], 1434 | 446462015 | hypothetical protein | |
23 | C_RS16125 | 3239189..3242527 [+], 3339 | 446755471 | type VI secretion protein VasK | |
24 | C_RS16130 (tssA) | 3242520..3244130 [+], 1611 | 485828325 | type VI secretion system protein TssA | |
25 | C_RS16135 (tssF) | 3244164..3245922 [+], 1759 | pseudogene | type VI secretion system baseplate subunit TssF | |
26 | C_RS16140 (tssG) | 3245886..3246965 [+], 1080 | 446295459 | type VI secretion system baseplate subunit TssG | |
27 | C_RS16145 (tssJ) | 3246946..3247482 [+], 537 | 446406153 | type VI secretion system lipoprotein TssJ | |
28 | C_RS16150 (tssE) | 3247486..3247914 [+], 429 | 446029112 | type VI secretion system baseplate subunit TssE | |
29 | C_RS16155 | 3247914..3249290 [+], 1377 | 446079962 | type VI secretion system ImpA family N-terminal domain-containing protein | |
30 | C_RS16160 | 3249590..3250537 [-], 948 | 485663869 | phosphoglycerate dehydrogenase | |
31 | C_RS16165 | 3250609..3251205 [-], 597 | 446988967 | SIS domain-containing protein | |
32 | C_RS16170 | 3251208..3252383 [-], 1176 | 446304558 | PatB family C-S lyase | |
33 | C_RS16175 | 3252383..3253963 [-], 1581 | 446733301 | PTS transporter subunit EIIC | |
34 | C_RS16180 | 3253995..3254819 [-], 825 | 486165963 | PRD domain-containing protein | |
35 | C_RS16185 (amiC) | 3255077..3256330 [-], 1254 | 445939052 | N-acetylmuramoyl-L-alanine amidase AmiC | |
36 | C_RS16190 (argA) | 3256562..3257893 [+], 1332 | 446160092 | amino-acid N-acetyltransferase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein