I. Summary

SecReT6 ID	370
Strain	Vibrio sp. Ex25
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_013457
Location	10374..32419
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VEA_000009	5715..5906 [-], 192	262395308	hypothetical protein
2	VEA_000010	5941..6276 [-], 336	262395309	HPT domain containing protein
3	VEA_000011	6706..8856 [-], 2151	262395310	serine/threonine protein kinase
4	VEA_000012	9169..10362 [+], 1194	262395311	hypothetical protein	Fha
5	VEA_000013	10374..10829 [+], 456	262395312	type VI secretion lipoprotein/VasD	TssJ
6	VEA_000014	10887..12176 [+], 1290	262395313	hypothetical protein	TssK
7	VEA_000015	12188..13480 [+], 1293	262395314	Flagellar motor rotation protein MotB	TssL
8	VEA_000016	13497..17015 [+], 3519	262395315	IcmF-related protein	TssM
9	VEA_000017	16997..17692 [+], 696	262395316	protein phosphatase ImpM
10	VEA_000018	17702..18496 [+], 795	262395317	serine/threonine protein phosphatase
11	VEA_000019	18489..19607 [+], 1119	262395318	hypothetical protein	TssA
12	VEA_000020	19623..20153 [+], 531	262395319	hypothetical protein	TssB
13	VEA_000021	20153..21646 [+], 1494	262395320	hypothetical protein	TssC
14	VEA_000022	21711..23210 [+], 1500	262395321	hypothetical protein	TssC
15	VEA_000023	23221..24015 [+], 795	262395322	protein of avirulence locus ImpE	TagJ
16	VEA_000024	24023..24487 [+], 465	262395323	hypothetical protein	TssE
17	VEA_000025	24484..26307 [+], 1824	262395324	protein ImpG/VasA	TssF
18	VEA_000026	26304..27269 [+], 966	262395325	hypothetical protein	TssG
19	VEA_000027	27280..29847 [+], 2568	262395326	ClpB protein	TssH
20	VEA_000028	30056..30535 [+], 480	262395327	hemolysin-coregulated protein	TssD
21	VEA_000029	30584..32419 [+], 1836	262395328	hypothetical protein	TssI
22	VEA_000030	32431..32721 [+], 291	262395329	hypothetical protein	PAAR
23	VEA_000031	32722..33561 [+], 840	262395330	NAD/NADP transhydrogenase beta subunit
24	VEA_000032	33886..35019 [+], 1134	262395331	exonuclease SbcD

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VPA1027

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	VEA_000028	30056..30535 [+], 480	262395327	hemolysin-coregulated protein	VPA1027

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Proteins        Genes

N/A

N/A