I. Summary

SecReT6 ID	371
Strain	Vibrio sp. Ex25
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_013457
Location	488136..517330
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VEA_000426	483156..483485 [-], 330	262395726	hypothetical protein
2	VEA_000427	484286..486517 [-], 2232	262395727	hypothetical protein
3	VEA_000428	486530..487987 [-], 1458	262395728	hypothetical protein	PAAR
4	VEA_000429	488136..488927 [-], 792	262395729	ImpK/VasF outer membrane protein	TssL
5	VEA_000430	488924..490249 [-], 1326	262395730	hypothetical protein	TssK
6	VEA_000431	490261..490761 [-], 501	262395731	type VI secretion lipoprotein/VasD	TssJ
7	VEA_000432	490754..492247 [-], 1494	262395732	hypothetical protein	Fha
8	VEA_000433	492257..492856 [-], 600	262395733	hypothetical protein
9	VEA_000434	493395..494708 [+], 1314	262395734	hypothetical protein	TssA
10	VEA_000435	494736..498128 [+], 3393	262395735	IcmF-related protein	TssM
11	VEA_000436	498157..498609 [+], 453	262395736	transcriptional regulator
12	VEA_000437	498664..499662 [-], 999	262395737	hypothetical protein	TssG
13	VEA_000438	499659..501407 [-], 1749	262395738	protein ImpG/VasA	TssF
14	VEA_000439	501418..501828 [-], 411	262395739	hypothetical protein	TssE
15	VEA_000440	501890..503365 [-], 1476	262395740	hypothetical protein	TssC
16	VEA_000441	503374..503880 [-], 507	262395741	hypothetical protein	TssB
17	VEA_000442	503907..505475 [-], 1569	262395742	hypothetical protein	TssA
18	VEA_000443	505462..507462 [-], 2001	262395743	serine/threonine protein kinase
19	VEA_000444	507700..508644 [-], 945	262395744	hypothetical protein
20	VEA_000445	508637..509629 [-], 993	262395745	pentapeptide repeat family protein
21	VEA_000446	509610..510929 [-], 1320	262395746	hypothetical protein
22	VEA_000447	511041..511439 [-], 399	262395747	hypothetical protein
23	VEA_000448	511526..513604 [-], 2079	262395748	VgrG protein	TssI
24	VEA_000449	513677..514195 [-], 519	262395749	Hcp protein	TssD
25	VEA_000450	515267..517330 [+], 2064	262395750	ClpB protein	TssH
26	VEA_000451	517317..518948 [+], 1632	262395751	transcriptional regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VEPGS_0021

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	VEA_000449	513677..514195 [-], 519	262395749	Hcp protein	VEPGS_0021

Download FASTA format files

Proteins        Genes

N/A

N/A