SecReT6
I. Summary
SecReT6 ID373 insolico
StrainDickeya dadantii Ech586
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013592
Location1438517..1458777
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number101021111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Dd586_12841433859..1434323 [+], 465271499848cell wall assembly/cell proliferation coordinating protein 
2Dd586_12861434551..1435087 [+], 537271499849cell wall assembly/cell proliferation coordinating protein 
3Dd586_12881435379..1435906 [-], 528271499850hypothetical protein 
4Dd586_12891436220..1437377 [+], 1158271499851amidohydrolase 
5Dd586_12901438517..1439020 [+], 504271499852type VI secretion protein, VC_A0107 family  TssB
6Dd586_12911439052..1440530 [+], 1479271499853type VI secretion protein, EvpB/VC_A0108 family  TssC
7Dd586_12921440537..1440968 [+], 432271499854type VI secretion system lysozyme-like protein  TssE
8Dd586_12931440971..1442737 [+], 1767271499855type VI secretion protein, VC_A0110 family  TssF
9Dd586_12941442701..1443714 [+], 1014271499856type VI secretion protein, VC_A0111 family  TssG
10Dd586_12951443717..1444931 [+], 1215271499857FHA domain containing protein  Fha
11Dd586_12961444931..1445467 [+], 537271499858type VI secretion lipoprotein, VC_A0113 family  TssJ
12Dd586_12971445470..1446807 [+], 1338271499859type VI secretion protein, VC_A0114 family  TssK
13Dd586_12981446824..1447600 [+], 777271499860type IV / VI secretion system protein, DotU family  TssL
14Dd586_12991447616..1450216 [+], 2601271499861type VI secretion ATPase, ClpV1 family  TssH
15Dd586_13001450219..1451757 [+], 1539271499862putative sigma54 specific transcriptional regulator 
16Dd586_13011451757..1452320 [+], 564271499863type VI secretion-associated protein, VC_A0118 family 
17Dd586_13021452332..1453768 [+], 1437271499864type VI secretion-associated protein, VC_A0119 family  TssA
18Dd586_13031453794..1457291 [+], 3498271499865type VI secretion protein IcmF  TssM
19Dd586_13041457344..1458777 [+], 1434271499866ImpA domain-containing protein  TssA
20Dd586_13051458859..1460229 [+], 1371271499867Sel1 domain-containing protein repeat-containing protein 
21Dd586_13061460385..1461317 [+], 933271499868hypothetical protein 
22Dd586_13071461384..1462244 [-], 861271499869aminotransferase class IV 
23Dd586_13081462244..1463254 [-], 1011271499870mandelate racemase/muconate lactonizing protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ECA4275 , ECA3427, ECA2866, Dda3937_01758

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Dd586_12721418778..1419296 [+], 519271499836type VI secretion system effector, Hcp1 family ECA4275
2Dd586_12731419461..1421497 [+], 2037271499837type VI secretion system Vgr family protein ECA3427
3Dd586_14711665176..1665694 [+], 519271500019type VI secretion system effector, Hcp1 family ECA2866
4Dd586_14741668092..1672372 [+], 4281271500022YD repeat-containing protein Dda3937_01758

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU