 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Dd586_1284 | 1433859..1434323 [+], 465 | 271499848 | cell wall assembly/cell proliferation coordinating protein | |
2 | Dd586_1286 | 1434551..1435087 [+], 537 | 271499849 | cell wall assembly/cell proliferation coordinating protein | |
3 | Dd586_1288 | 1435379..1435906 [-], 528 | 271499850 | hypothetical protein | |
4 | Dd586_1289 | 1436220..1437377 [+], 1158 | 271499851 | amidohydrolase | |
5 | Dd586_1290 | 1438517..1439020 [+], 504 | 271499852 | type VI secretion protein, VC_A0107 family | TssB |
6 | Dd586_1291 | 1439052..1440530 [+], 1479 | 271499853 | type VI secretion protein, EvpB/VC_A0108 family | TssC |
7 | Dd586_1292 | 1440537..1440968 [+], 432 | 271499854 | type VI secretion system lysozyme-like protein | TssE |
8 | Dd586_1293 | 1440971..1442737 [+], 1767 | 271499855 | type VI secretion protein, VC_A0110 family | TssF |
9 | Dd586_1294 | 1442701..1443714 [+], 1014 | 271499856 | type VI secretion protein, VC_A0111 family | TssG |
10 | Dd586_1295 | 1443717..1444931 [+], 1215 | 271499857 | FHA domain containing protein | Fha |
11 | Dd586_1296 | 1444931..1445467 [+], 537 | 271499858 | type VI secretion lipoprotein, VC_A0113 family | TssJ |
12 | Dd586_1297 | 1445470..1446807 [+], 1338 | 271499859 | type VI secretion protein, VC_A0114 family | TssK |
13 | Dd586_1298 | 1446824..1447600 [+], 777 | 271499860 | type IV / VI secretion system protein, DotU family | TssL |
14 | Dd586_1299 | 1447616..1450216 [+], 2601 | 271499861 | type VI secretion ATPase, ClpV1 family | TssH |
15 | Dd586_1300 | 1450219..1451757 [+], 1539 | 271499862 | putative sigma54 specific transcriptional regulator | |
16 | Dd586_1301 | 1451757..1452320 [+], 564 | 271499863 | type VI secretion-associated protein, VC_A0118 family | |
17 | Dd586_1302 | 1452332..1453768 [+], 1437 | 271499864 | type VI secretion-associated protein, VC_A0119 family | TssA |
18 | Dd586_1303 | 1453794..1457291 [+], 3498 | 271499865 | type VI secretion protein IcmF | TssM |
19 | Dd586_1304 | 1457344..1458777 [+], 1434 | 271499866 | ImpA domain-containing protein | TssA |
20 | Dd586_1305 | 1458859..1460229 [+], 1371 | 271499867 | Sel1 domain-containing protein repeat-containing protein | |
21 | Dd586_1306 | 1460385..1461317 [+], 933 | 271499868 | hypothetical protein | |
22 | Dd586_1307 | 1461384..1462244 [-], 861 | 271499869 | aminotransferase class IV | |
23 | Dd586_1308 | 1462244..1463254 [-], 1011 | 271499870 | mandelate racemase/muconate lactonizing protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein