I. Summary

SecReT6 ID	379
Strain	Azospirillum sp. B510
Replicon	plasmid pAB510a [Browse all T6SS(s) in this replicon]
Accession	NC_013855
Location	178844..204990
Comment
Function	N/A
T6SS Type	Type i; subtype i4a
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	AZL_a01530	174515..175291 [-], 777	288959888	hypothetical protein
2	AZL_a01540	175828..176841 [+], 1014	288959889	two-component response regulator
3	AZL_a01550	176974..178041 [+], 1068	288959890	hypothetical protein
4	AZL_a01560	178263..178847 [-], 585	288959891	hypothetical protein
5	AZL_a01570	178844..179437 [-], 594	288959892	hypothetical protein	TssD
6	AZL_a01580	179445..180575 [-], 1131	288959893	impA domain protein	TssA
7	AZL_a01590	180606..184820 [-], 4215	288959894	hypothetical protein	TssM
8	AZL_a01600	184843..185601 [-], 759	288959895	hypothetical protein	TssL
9	AZL_a01610	185768..187111 [-], 1344	288959896	hypothetical protein	TssK
10	AZL_a01620	187139..187576 [-], 438	288959897	hypothetical protein
11	AZL_a01630	187576..188385 [-], 810	288959898	hypothetical protein	SPOR
12	AZL_a01640	188636..189214 [-], 579	288959899	hypothetical protein	SPOR
13	AZL_a01650	189175..189774 [-], 600	288959900	hypothetical protein
14	AZL_a01660	189771..191798 [-], 2028	288959901	serine phosphatase
15	AZL_a01670	191795..193714 [-], 1920	288959902	hypothetical protein
16	AZL_a01680	193718..194626 [-], 909	288959903	hypothetical protein
17	AZL_a01690	195268..195984 [+], 717	288959904	hypothetical protein
18	AZL_a01700	196189..196731 [+], 543	288959905	hypothetical protein	TssB
19	AZL_a01710	196778..198247 [+], 1470	288959906	hypothetical protein	TssC
20	AZL_a01720	198295..198804 [+], 510	288959907	hypothetical protein	TssD
21	AZL_a01730	198877..199434 [+], 558	288959908	hypothetical protein	TssE
22	AZL_a01740	199436..201232 [+], 1797	288959909	hypothetical protein	TssF
23	AZL_a01750	201196..202233 [+], 1038	288959910	hypothetical protein	TssG
24	AZL_a01760	202383..203465 [+], 1083	288959911	hypothetical protein	TssH
25	AZL_a01770	202897..204990 [+], 2094	288959912	hypothetical protein	TssI
26	AZL_a01780	204992..205693 [+], 702	288959913	hypothetical protein
27	AZL_a01790	205712..206101 [-], 390	288959914	hypothetical protein
28	AZL_a01800	206225..207382 [-], 1158	288959915	hypothetical protein
29	AZL_a01810	208361..209005 [+], 645	288959916	coronamic acid synthetase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A