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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VV2_0416 | 450819..451718 [-], 900 | 27366854 | hypothetical protein | |
2 | VV2_0419 | 452116..452595 [-], 480 | 326424230 | hypothetical protein | |
3 | VV2_0420 | 452756..453367 [-], 612 | 326424231 | transposase | |
4 | VV2_0421 | 453447..453674 [-], 228 | 27366858 | transposase | |
5 | VV2_0422 | 453809..454318 [-], 510 | 27366859 | hypothetical protein | |
6 | VV2_0423 | 454315..454470 [-], 156 | 27366860 | hypothetical protein | |
7 | VV2_0424 | 454476..454859 [-], 384 | 27366861 | helicase subunit of the DNA excision repair complex | |
8 | VV2_0425 | 454907..459340 [-], 4434 | 27366862 | Rhs family protein | |
9 | VV2_0426 | 459341..460249 [-], 909 | 27366863 | NAD/NADP transhydrogenase subunit beta | |
10 | VV2_0427 | 460250..460540 [-], 291 | 27366864 | hypothetical protein | PAAR |
11 | VV2_0428 | 460550..462385 [-], 1836 | 326424232 | hypothetical protein | TssI |
12 | VV2_0429 | 462440..462919 [-], 480 | 27366866 | hemolysin-coregulated protein | TssD |
13 | VV2_0430 (clpV) | 463135..465699 [-], 2565 | 27366867 | type VI secretion ATPase, ClpV1 family | TssH |
14 | VV2_0431 | 465713..466681 [-], 969 | 27366868 | hypothetical protein | TssG |
15 | VV2_0432 | 466678..468504 [-], 1827 | 27366869 | protein ImpG/VasA | TssF |
16 | VV2_0433 | 468501..468974 [-], 474 | 27366870 | hypothetical protein | TssE |
17 | VV2_0434 | 468971..469774 [-], 804 | 27366871 | protein of avirulence locus ImpE | TagJ |
18 | VV2_0435 | 469785..471278 [-], 1494 | 27366872 | hypothetical protein | TssC |
19 | VV2_0436 | 471323..472816 [-], 1494 | 27366873 | hypothetical protein | TssC |
20 | VV2_0437 | 472828..473340 [-], 513 | 27366874 | hypothetical protein | TssB |
21 | VV2_0438 | 473357..474490 [-], 1134 | 27366875 | hypothetical protein | TssA |
22 | VV2_0439 | 474490..475323 [-], 834 | 27366876 | serine/threonine protein phosphatase | |
23 | VV2_0440 | 475295..475990 [-], 696 | 27366877 | protein phosphatase ImpM | |
24 | VV2_0441 | 475972..479496 [-], 3525 | 326424233 | IcmF-like protein | TssM |
25 | VV2_0442 | 479474..480802 [-], 1329 | 27366879 | flagellar motor protein | TssL |
26 | VV2_0443 | 480811..482133 [-], 1323 | 326424234 | hypothetical protein | TssK |
27 | VV2_0444 | 482157..482612 [-], 456 | 27366881 | Type VI secretion lipoprotein/VasD | TssJ |
28 | VV2_0445 | 482613..483830 [-], 1218 | 326424235 | hypothetical protein | Fha |
29 | VV2_0446 | 484146..486314 [+], 2169 | 326424236 | serine/threonine protein kinase | |
30 | VV2_0447 | 486378..486995 [-], 618 | 27366884 | glutathione S-transferase | |
31 | VV2_0448 | 487096..487683 [+], 588 | 27366885 | transcriptional regulator | |
32 | VV2_0449 | 487680..488078 [+], 399 | 27366886 | DNA-binding protein | |
33 | VV2_0450 | 488082..488345 [-], 264 | 27366887 | hypothetical protein | |
34 | VV2_0451 | 488345..488575 [-], 231 | 27366888 | hypothetical protein | |
35 | VV2_0452 | 488703..489047 [-], 345 | 27366889 | Type III effector HopPmaJ | |
36 | VV2_0453 | 489309..490907 [+], 1599 | 326424237 | signal transduction protein | |
37 | VV2_0454 | 491007..491339 [-], 333 | 27366891 | pterin-4-alpha-carbinolamine dehydratase | |
38 | VV2_0455 (phhA) | 491332..492123 [-], 792 | 27366892 | phenylalanine 4-monooxygenase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein