I. Summary
SecReT6 ID381 insolico
StrainXenorhabdus bovienii SS-2004
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1XBJ1_0259 (xhlB)266234..267904 [-], 1671290473342XhlB (TpsB protein) 
2XBJ1_0260268225..268359 [-], 135290473343hypothetical protein 
3XBJ1_0261268621..269139 [-], 519290473344hemolysin-coregulated protein Hcp  TssD
4XBJ1_0262269183..269338 [-], 156290473345hypothetical protein 
5XBJ1_0263270061..270558 [+], 498290473346hypothetical protein  TssB
6XBJ1_0264270579..272057 [+], 1479290473347hypothetical protein  TssC
7XBJ1_0265272060..272500 [+], 441290473348hypothetical protein  TssE
8XBJ1_0266272501..274333 [+], 1833290473349hypothetical protein  TssF
9XBJ1_0267274297..275349 [+], 1053290473350hypothetical protein  TssG
10XBJ1_0268275355..276650 [+], 1296290473351hypothetical protein  Fha
11XBJ1_0269276634..277188 [+], 555290473352hypothetical protein  TssJ
12XBJ1_0270277191..278543 [+], 1353290473353hypothetical protein  TssK
13XBJ1_0271278546..279313 [+], 768290473354hypothetical protein  TssL
14XBJ1_0272 (clpB)279323..282037 [+], 2715290473355ClpA/B-type chaperone  TssH
15XBJ1_0273282037..282831 [+], 795290473356hypothetical protein 
16XBJ1_0274282828..283493 [+], 666290473357hypothetical protein 
17XBJ1_0275283499..284935 [+], 1437290473358hypothetical protein  TssA
18XBJ1_0276284932..288501 [+], 3570290473359hypothetical protein  TssM
19XBJ1_0277288584..289975 [+], 1392290473360hypothetical protein  TssA
20XBJ1_0278289991..293062 [+], 3072290473361Rhs accessory genetic element  TssI
21XBJ1_0279293056..293421 [+], 366290473362hypothetical protein 
22XBJ1_0280293690..294145 [+], 456290473363hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1XBJ1_0261268621..269139 [-], 519290473344hemolysin-coregulated protein Hcp ECA4275

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Proteins        Genes