I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | XBJ1_0259 (xhlB) | 266234..267904 [-], 1671 | 290473342 | XhlB (TpsB protein) | |
2 | XBJ1_0260 | 268225..268359 [-], 135 | 290473343 | hypothetical protein | |
3 | XBJ1_0261 | 268621..269139 [-], 519 | 290473344 | hemolysin-coregulated protein Hcp | TssD |
4 | XBJ1_0262 | 269183..269338 [-], 156 | 290473345 | hypothetical protein | |
5 | XBJ1_0263 | 270061..270558 [+], 498 | 290473346 | hypothetical protein | TssB |
6 | XBJ1_0264 | 270579..272057 [+], 1479 | 290473347 | hypothetical protein | TssC |
7 | XBJ1_0265 | 272060..272500 [+], 441 | 290473348 | hypothetical protein | TssE |
8 | XBJ1_0266 | 272501..274333 [+], 1833 | 290473349 | hypothetical protein | TssF |
9 | XBJ1_0267 | 274297..275349 [+], 1053 | 290473350 | hypothetical protein | TssG |
10 | XBJ1_0268 | 275355..276650 [+], 1296 | 290473351 | hypothetical protein | Fha |
11 | XBJ1_0269 | 276634..277188 [+], 555 | 290473352 | hypothetical protein | TssJ |
12 | XBJ1_0270 | 277191..278543 [+], 1353 | 290473353 | hypothetical protein | TssK |
13 | XBJ1_0271 | 278546..279313 [+], 768 | 290473354 | hypothetical protein | TssL |
14 | XBJ1_0272 (clpB) | 279323..282037 [+], 2715 | 290473355 | ClpA/B-type chaperone | TssH |
15 | XBJ1_0273 | 282037..282831 [+], 795 | 290473356 | hypothetical protein | |
16 | XBJ1_0274 | 282828..283493 [+], 666 | 290473357 | hypothetical protein | |
17 | XBJ1_0275 | 283499..284935 [+], 1437 | 290473358 | hypothetical protein | TssA |
18 | XBJ1_0276 | 284932..288501 [+], 3570 | 290473359 | hypothetical protein | TssM |
19 | XBJ1_0277 | 288584..289975 [+], 1392 | 290473360 | hypothetical protein | TssA |
20 | XBJ1_0278 | 289991..293062 [+], 3072 | 290473361 | Rhs accessory genetic element | TssI |
21 | XBJ1_0279 | 293056..293421 [+], 366 | 290473362 | hypothetical protein | |
22 | XBJ1_0280 | 293690..294145 [+], 456 | 290473363 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.