I. Summary

SecReT6 ID	381
Strain	Xenorhabdus bovienii SS-2004
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013892
Location	268621..293062
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XBJ1_0259 (xhlB)	266234..267904 [-], 1671	290473342	XhlB (TpsB protein)
2	XBJ1_0260	268225..268359 [-], 135	290473343	hypothetical protein
3	XBJ1_0261	268621..269139 [-], 519	290473344	hemolysin-coregulated protein Hcp	TssD
4	XBJ1_0262	269183..269338 [-], 156	290473345	hypothetical protein
5	XBJ1_0263	270061..270558 [+], 498	290473346	hypothetical protein	TssB
6	XBJ1_0264	270579..272057 [+], 1479	290473347	hypothetical protein	TssC
7	XBJ1_0265	272060..272500 [+], 441	290473348	hypothetical protein	TssE
8	XBJ1_0266	272501..274333 [+], 1833	290473349	hypothetical protein	TssF
9	XBJ1_0267	274297..275349 [+], 1053	290473350	hypothetical protein	TssG
10	XBJ1_0268	275355..276650 [+], 1296	290473351	hypothetical protein	Fha
11	XBJ1_0269	276634..277188 [+], 555	290473352	hypothetical protein	TssJ
12	XBJ1_0270	277191..278543 [+], 1353	290473353	hypothetical protein	TssK
13	XBJ1_0271	278546..279313 [+], 768	290473354	hypothetical protein	TssL
14	XBJ1_0272 (clpB)	279323..282037 [+], 2715	290473355	ClpA/B-type chaperone	TssH
15	XBJ1_0273	282037..282831 [+], 795	290473356	hypothetical protein
16	XBJ1_0274	282828..283493 [+], 666	290473357	hypothetical protein
17	XBJ1_0275	283499..284935 [+], 1437	290473358	hypothetical protein	TssA
18	XBJ1_0276	284932..288501 [+], 3570	290473359	hypothetical protein	TssM
19	XBJ1_0277	288584..289975 [+], 1392	290473360	hypothetical protein	TssA
20	XBJ1_0278	289991..293062 [+], 3072	290473361	Rhs accessory genetic element	TssI
21	XBJ1_0279	293056..293421 [+], 366	290473362	hypothetical protein
22	XBJ1_0280	293690..294145 [+], 456	290473363	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ECA4275

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	XBJ1_0261	268621..269139 [-], 519	290473344	hemolysin-coregulated protein Hcp	ECA4275

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Proteins        Genes

N/A

N/A