I. Summary
SecReT6 ID383 insolico
StrainEscherichia coli O55:H7 str. CB9615
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1G2583_0218 (rnhA)239045..239512 [-], 468291281031RNase HI 
2G2583_0219 (dnaQ)239577..240308 [+], 732291281032DNA polymerase III epsilon subunit 
3G2583_0221 (yafT)240845..241645 [+], 801291281033hypothetical protein 
4G2583_0222241830..242126 [-], 297291281034hypothetical protein 
5G2583_0223242123..242578 [-], 456291281035hypothetical protein 
6G2583_0224242575..243471 [-], 897291281036hypothetical protein 
7G2583_0225 (yhhZ)243492..243971 [-], 480291281037hypothetical protein  TssD
8G2583_0226 (impA)243937..245436 [-], 1500291281038ImpA domain protein  TssA
9G2583_0227245357..248821 [-], 3465291281039macrophage toxin  TssM
10G2583_0228 (impA)248900..250312 [-], 1413291281040ImpA domain protein  TssA
11G2583_0229250317..251060 [-], 744291281041type VI secretion-associated protein, VC_A0118 family 
12G2583_0230 (clpB)251057..253840 [-], 2784291281042type VI secretion ATPase, ClpV1 family  TssH
13G2583_0231253849..254610 [-], 762291281043hypothetical protein  TssL
14G2583_0232254615..255946 [-], 1332291281044hypothetical protein  TssK
15G2583_0233255949..256473 [-], 525291281045type VI secretion lipoprotein, VC_A0113 family  TssJ
16G2583_0234256470..257480 [-], 1011291281046hypothetical protein  Fha
17G2583_0235257774..258856 [-], 1083291281047hypothetical protein  TssG
18G2583_0236258820..260670 [-], 1851291281048hypothetical protein  TssF
19G2583_0237260674..261087 [-], 414291281049hypothetical protein  TssE
20G2583_0239262620..262844 [-], 225291281050hypothetical protein  TssC
21G2583_0240262879..263379 [-], 501291281051hypothetical protein  TssB
22G2583_0241263806..263949 [+], 144291281052hypothetical protein 
23G2583_0242264076..264594 [+], 519291281053Hcp  TssD
24G2583_0243264627..264764 [+], 138291281054hypothetical protein 
25G2583_0244 (vgrG)264804..266945 [+], 2142291281055VgrG  TssI
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1G2583_0242264076..264594 [+], 519291281053Hcp ECA4275

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Proteins        Genes