SecReT6
I. Summary
SecReT6 ID385 insolico
StrainPantoea ananatis LMG 20103
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_013956
Location4583032..4612917
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
14
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PANA_4126 (blt)4578489..4579736 [+], 1248291619679Blt 
2PANA_4127 (proP)4580099..4581574 [+], 1476291619680ProP 
3PANA_4128 (ybcL)4581635..4582171 [-], 537291619681hypothetical protein 
4PANA_4129 (ydcX)4582540..4582713 [+], 174291619682hypothetical protein 
5PANA_41304583032..4584423 [-], 1392291619683hypothetical Protein  TssA
6PANA_41314584750..4585205 [-], 456291619684hypothetical Protein  TssE
7PANA_41324585205..4585750 [-], 546291619685hypothetical Protein  TssJ
8PANA_41334585728..4586813 [-], 1086291619686hypothetical Protein  TssG
9PANA_41344586777..4588576 [-], 1800291619687hypothetical Protein  TssF
10PANA_41354589072..4589506 [-], 435291619688hypothetical Protein 
11PANA_41364589506..4590804 [-], 1299291619689hypothetical Protein  PAAR
12PANA_41374590811..4592412 [-], 1602291619690hypothetical Protein  TssA
13PANA_41384592409..4595942 [-], 3534291619691hypothetical Protein  TssM
14PANA_41394595891..4597099 [-], 1209291619692hypothetical Protein 
15PANA_41404597280..4597768 [-], 489291619693hypothetical Protein 
16PANA_41414597911..4598192 [-], 282291619694hypothetical Protein 
17PANA_41424598418..4599122 [-], 705291619695hypothetical Protein 
18PANA_41434599126..4601357 [-], 2232291619696hypothetical Protein 
19PANA_41444601372..4603723 [-], 2352291619697hypothetical Protein  TssI
20PANA_4145 (clpV)4603720..4606374 [-], 2655291619698ClpV  TssH
21PANA_41464606548..4607075 [-], 528291619699hypothetical Protein  TssD
22PANA_41474607044..4608831 [-], 1788291619700hypothetical Protein  TagL
23PANA_41484608765..4609454 [-], 690291619701hypothetical Protein  TssL
24PANA_41494609451..4610791 [-], 1341291619702hypothetical Protein  TssK
25PANA_41504610809..4612356 [-], 1548291619703hypothetical Protein  TssC
26PANA_41514612390..4612917 [-], 528291619704hypothetical Protein  TssB
27PANA_4152 (clcA)4613967..4615007 [-], 1041291619705ClcA 
28PANA_4153 (glsA1)4615642..4616562 [+], 921291619706GlsA1 
29PANA_4154 (yiaE)4616564..4617505 [-], 942291619707hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PANA_41464606548..4607075 [-], 528291619699hypothetical Protein EC042_4529

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Proteins        Genes
N/A
(1) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
 
in_silico This literature contains bioinformatics investigation

Genomics & Bioinformatics Group in MML, SJTU