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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | EAMY_3197 (nikS) | 3288300..3289466 [-], 1167 | 292489660 | carbamoyl-phosphate synthase large subunit | |
2 | EAMY_3198 | 3290401..3290670 [-], 270 | 292489661 | hypothetical protein | |
3 | EAMY_3199 | 3291119..3291307 [-], 189 | 292489662 | plasmid-like protein | |
4 | EAMY_3200 | 3291366..3291587 [-], 222 | 292489663 | hypothetical protein | |
5 | EAMY_3201 | 3291637..3293037 [-], 1401 | 292489664 | type VI secretion system core protein | TssA |
6 | EAMY_3202 | 3293082..3293534 [-], 453 | 292489665 | type VI secretion system core protein | TssE |
7 | EAMY_3203 | 3294088..3294261 [+], 174 | 292489666 | hypothetical protein | |
8 | EAMY_3204 | 3294266..3295156 [-], 891 | 292489667 | hypothetical protein | TssI |
9 | EAMY_3205 | 3295172..3295267 [+], 96 | 292489668 | hypothetical protein | |
10 | EAMY_3206 | 3295981..3296565 [-], 585 | 292489669 | hypothetical protein | TssI |
11 | EAMY_3207 | 3296570..3296995 [-], 426 | 292489670 | hypothetical protein | TssJ |
12 | EAMY_3208 | 3297099..3297842 [-], 744 | 292489671 | hypothetical protein | |
13 | EAMY_3209 | 3299044..3299826 [-], 783 | 292489672 | hypothetical protein | |
14 | EAMY_3210 | 3299826..3300380 [-], 555 | 292489673 | hypothetical protein | |
15 | EAMY_3211 | 3300382..3302694 [-], 2313 | 292489674 | type VI secretion system effector protein VgrG | TssI |
16 | EAMY_3212 | 3302699..3303223 [-], 525 | 292489675 | type VI secretion system core protein | TssJ |
17 | EAMY_3213 | 3303249..3304331 [-], 1083 | 292489676 | type VI secretion system core protein | TssG |
18 | EAMY_3214 | 3304295..3306064 [-], 1770 | 292489677 | type VI secretion system core protein | TssF |
19 | EAMY_3215 | 3306219..3307826 [-], 1608 | 292489678 | type VI secretion system core protein | TssA |
20 | EAMY_3216 | 3307823..3311194 [-], 3372 | 292489679 | type VI secretion system core protein | TssM |
21 | EAMY_3217 | 3311187..3312395 [-], 1209 | 292489680 | hypothetical protein | |
22 | EAMY_3218 | 3312398..3312667 [-], 270 | 292489681 | hypothetical protein | PAAR |
23 | EAMY_3219 | 3312806..3313345 [-], 540 | 292489682 | hypothetical protein | |
24 | EAMY_3220 | 3313420..3315777 [-], 2358 | 292489683 | type VI secretion system effector protein VgrG | TssI |
25 | EAMY_3221 | 3315923..3316132 [-], 210 | 292489684 | hypothetical protein | |
26 | EAMY_3222 (clpV3) | 3316218..3318878 [-], 2661 | 292489685 | type VI secretion system core protein ATPase | TssH |
27 | EAMY_3223 (hcp) | 3319049..3319540 [-], 492 | 292489686 | type VI secretion system effector protein hcp | TssD |
28 | EAMY_3224 | 3319573..3321228 [-], 1656 | 292489687 | type VI secretion system-associated protein | TagL |
29 | EAMY_3225 | 3321228..3321905 [-], 678 | 292489688 | type VI secretion system-associated protein | TssL |
30 | EAMY_3226 | 3321902..3323251 [-], 1350 | 292489689 | type VI secretion system core protein | TssK |
31 | EAMY_3227 | 3323269..3324816 [-], 1548 | 292489690 | type VI secretion system core protein | TssC |
32 | EAMY_3228 | 3324851..3325348 [-], 498 | 292489691 | type VI secretion system core protein | TssB |
33 | EAMY_3229 | 3325818..3325997 [+], 180 | 292489692 | hypothetical protein | |
34 | EAMY_3230 | 3325977..3326078 [-], 102 | 292489693 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein