I. Summary

SecReT6 ID	389
Strain	Erwinia amylovora ATCC 49946
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_013971
Location	636187..668664
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

14

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	EAM_0566 (rsmC)	631966..632994 [-], 1029	292898288	ribosomal RNA small subunit methyltransferase C
2	EAM_0567 (holD)	633164..633586 [+], 423	292898289	DNA polymerase III subunit psi
3	EAM_0568 (rimI)	633549..633989 [+], 441	292898290	ribosomal-protein-alanine acetyltransferase
4	EAM_0569	634004..634684 [+], 681	292898291	5'-nucleotidase
5	EAM_0570	634818..635105 [+], 288	292898292	hypothetical protein
6	EAM_0571	635659..636162 [+], 504	292898293	lipoprotein
7	EAM_0572	636187..636699 [+], 513	292898294	lipoprotein	TssJ
8	EAM_0573	636719..638062 [+], 1344	292898295	hypothetical protein	TssK
9	EAM_0574	638080..639321 [+], 1242	292898296	outer membrane protein	TssL
10	EAM_0575	639325..642957 [+], 3633	292898297	membrane protein	TssM
11	EAM_0576	642968..643684 [+], 717	292898298	hypothetical protein
12	EAM_0577	643702..644721 [+], 1020	292898299	hypothetical protein	TssA
13	EAM_0578	644784..645320 [+], 537	292898300	hypothetical protein	TssB
14	EAM_0579	645324..646823 [+], 1500	292898301	hypothetical protein	TssC
15	EAM_0580	647101..647583 [+], 483	292898302	hypothetical protein	TssD
16	EAM_0581	647662..648141 [+], 480	292898303	hypothetical protein	Ssp2 (e)
17	EAM_0582	648126..648494 [+], 369	292898304	hypothetical protein
18	EAM_0583	648632..649039 [+], 408	292898305	hypothetical protein
19	EAM_0584	649165..649533 [+], 369	292898306	hypothetical protein
20	EAM_0585	649652..651493 [+], 1842	292898307	hypothetical protein	Fha
21	EAM_0586	651490..652284 [+], 795	292898308	protein phosphatase
22	EAM_0587	652303..653310 [+], 1008	292898309	hypothetical protein
23	EAM_0588	653320..654141 [+], 822	292898310	hypothetical protein	TagJ
24	EAM_0589	654138..654704 [+], 567	292898311	hypothetical protein	TssE
25	EAM_0590	654723..656597 [+], 1875	292898312	hypothetical protein	TssF
26	EAM_0591	656594..657658 [+], 1065	292898313	hypothetical protein	TssG
27	EAM_0592	657755..660370 [+], 2616	292898314	ATPase with chaperone activity	TssH
28	EAM_0593	660400..661806 [+], 1407	292898315	protein kinase
29	EAM_0594	661853..663817 [+], 1965	292898316	Rhs family protein	TssI
30	EAM_0595	663840..664907 [+], 1068	292898317	hypothetical protein	PAAR
31	EAM_0596	664931..665365 [+], 435	292898318	membrane protein
32	EAM_0597	665389..666456 [+], 1068	292898319	hypothetical protein
33	EAM_0598	666730..668664 [+], 1935	292898320	Rhs family protein	TssI
34	EAM_0599	668661..669110 [+], 450	292898321	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

SMA2263 , SMA2264

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	EAM_0580	647101..647583 [+], 483	292898302	hypothetical protein	SMA2263
2	EAM_0581	647662..648141 [+], 480	292898303	hypothetical protein	SMA2264

Download FASTA format files

Proteins        Genes

N/A

N/A