I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | EAM_0566 (rsmC) | 631966..632994 [-], 1029 | 292898288 | ribosomal RNA small subunit methyltransferase C | |
2 | EAM_0567 (holD) | 633164..633586 [+], 423 | 292898289 | DNA polymerase III subunit psi | |
3 | EAM_0568 (rimI) | 633549..633989 [+], 441 | 292898290 | ribosomal-protein-alanine acetyltransferase | |
4 | EAM_0569 | 634004..634684 [+], 681 | 292898291 | 5'-nucleotidase | |
5 | EAM_0570 | 634818..635105 [+], 288 | 292898292 | hypothetical protein | |
6 | EAM_0571 | 635659..636162 [+], 504 | 292898293 | lipoprotein | |
7 | EAM_0572 | 636187..636699 [+], 513 | 292898294 | lipoprotein | TssJ |
8 | EAM_0573 | 636719..638062 [+], 1344 | 292898295 | hypothetical protein | TssK |
9 | EAM_0574 | 638080..639321 [+], 1242 | 292898296 | outer membrane protein | TssL |
10 | EAM_0575 | 639325..642957 [+], 3633 | 292898297 | membrane protein | TssM |
11 | EAM_0576 | 642968..643684 [+], 717 | 292898298 | hypothetical protein | |
12 | EAM_0577 | 643702..644721 [+], 1020 | 292898299 | hypothetical protein | TssA |
13 | EAM_0578 | 644784..645320 [+], 537 | 292898300 | hypothetical protein | TssB |
14 | EAM_0579 | 645324..646823 [+], 1500 | 292898301 | hypothetical protein | TssC |
15 | EAM_0580 | 647101..647583 [+], 483 | 292898302 | hypothetical protein | TssD |
16 | EAM_0581 | 647662..648141 [+], 480 | 292898303 | hypothetical protein | Ssp2 (e) |
17 | EAM_0582 | 648126..648494 [+], 369 | 292898304 | hypothetical protein | |
18 | EAM_0583 | 648632..649039 [+], 408 | 292898305 | hypothetical protein | |
19 | EAM_0584 | 649165..649533 [+], 369 | 292898306 | hypothetical protein | |
20 | EAM_0585 | 649652..651493 [+], 1842 | 292898307 | hypothetical protein | Fha |
21 | EAM_0586 | 651490..652284 [+], 795 | 292898308 | protein phosphatase | |
22 | EAM_0587 | 652303..653310 [+], 1008 | 292898309 | hypothetical protein | |
23 | EAM_0588 | 653320..654141 [+], 822 | 292898310 | hypothetical protein | TagJ |
24 | EAM_0589 | 654138..654704 [+], 567 | 292898311 | hypothetical protein | TssE |
25 | EAM_0590 | 654723..656597 [+], 1875 | 292898312 | hypothetical protein | TssF |
26 | EAM_0591 | 656594..657658 [+], 1065 | 292898313 | hypothetical protein | TssG |
27 | EAM_0592 | 657755..660370 [+], 2616 | 292898314 | ATPase with chaperone activity | TssH |
28 | EAM_0593 | 660400..661806 [+], 1407 | 292898315 | protein kinase | |
29 | EAM_0594 | 661853..663817 [+], 1965 | 292898316 | Rhs family protein | TssI |
30 | EAM_0595 | 663840..664907 [+], 1068 | 292898317 | hypothetical protein | PAAR |
31 | EAM_0596 | 664931..665365 [+], 435 | 292898318 | membrane protein | |
32 | EAM_0597 | 665389..666456 [+], 1068 | 292898319 | hypothetical protein | |
33 | EAM_0598 | 666730..668664 [+], 1935 | 292898320 | Rhs family protein | TssI |
34 | EAM_0599 | 668661..669110 [+], 450 | 292898321 | hypothetical protein | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.