I. Summary
SecReT6 ID39 insolico
StrainBradyrhizobium japonicum USDA 110
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1bll35783953016..3953339 [-], 32427378689two-component response regulator 
2bll35793953476..3954267 [-], 79227378690hypothetical protein 
3bsr35803954717..3954941 [+], 22527378691hypothetical protein 
4blr35813955014..3955916 [+], 90327378692hypothetical protein 
5bll35823956041..3956988 [-], 94827378693hypothetical protein 
6bll35833957252..3958016 [-], 76527378694hypothetical protein 
7blr35843958210..3959556 [+], 134727378695transposase 
8blr35853959846..3960496 [+], 65127378696hypothetical protein 
9bll35863960586..3962187 [-], 160227378697hypothetical protein 
10bll3587 (clpB)3962178..3964817 [-], 264027378698ATP-dependent Clp protease ATP-binding subunit  TssH
11bll35883964915..3965979 [-], 106527378699hypothetical protein  TssG
12bll35893965943..3966599 [-], 65727378700hypothetical protein  TssF
13bll35903966580..3967911 [-], 133227378701hypothetical protein  TssF
14bll35913967913..3968461 [-], 54927378702hypothetical protein  TssE
15bll35923968644..3969129 [-], 48627378703hypothetical protein  TssD
16bll35933969180..3970691 [-], 151227378704hypothetical protein  TssC
17bll35943970699..3971250 [-], 55227378705hypothetical protein  TssB
18bll35953971366..3972706 [-], 134127378706hypothetical protein  TssA
19blr35963973027..3974895 [+], 186927378707hypothetical protein  TssI
20blr35973974901..3975464 [+], 56427378708hypothetical protein 
21blr35983975474..3976856 [+], 138327378709hypothetical protein  Fha
22blr35993976893..3978242 [+], 135027378710hypothetical protein  TssK
23blr36003978239..3979765 [+], 152727378711hypothetical protein  TssL
24blr36013979809..3983345 [+], 353727378712hypothetical protein  TssM
25blr36023983342..3984043 [+], 70227378713hypothetical protein 
26blr36033984050..3984826 [+], 77727378714serine/threonine phosphatase 
27blr36043984823..3986631 [+], 180927378715serine/threonine kinase 
28bll36053986641..3987753 [-], 111327378716hypothetical protein 
29bsl36063987723..3988013 [-], 29127378717hypothetical protein 
30blr36073988164..3989885 [+], 172227378718hypothetical protein 
31blr36083989925..3991724 [+], 180027378719hypothetical protein 
32blr36093991744..3992391 [+], 64827378720hypothetical protein 
33bll36103992419..3993411 [-], 99327378721hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation