I. Summary

SecReT6 ID	390
Strain	Yersinia pestis Z176003
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014029
Location	586195..609809
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

13

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPZ3_0481 (djlA)	582148..582981 [+], 834	294502591	Dna-J like membrane chaperone protein
2	YPZ3_0482 (rluA)	583279..583899 [-], 621	294502592	ribosomal large subunit pseudouridine synthase A
3	YPZ3_0483	585122..585865 [-], 744	294502593	hypothetical protein
4	YPZ3_0484	586195..587208 [+], 1014	294502594	hypothetical protein	TssA
5	YPZ3_0485	587219..587779 [+], 561	294502595	hypothetical protein	TssB
6	YPZ3_0486	587788..589290 [+], 1503	294502596	hypothetical protein	TssC
7	YPZ3_0487	589453..589971 [+], 519	294502597	hypothetical protein	TssD
8	YPZ3_0488	590045..590488 [+], 444	294502598	hypothetical protein	TssE
9	YPZ3_0489	590521..592365 [+], 1845	294502599	hypothetical protein	TssF
10	YPZ3_0490	592427..593341 [+], 915	294502600	hypothetical protein	TssG
11	YPZ3_0491	593359..595947 [+], 2589	294502601	Clp ATPase	TssH
12	YPZ3_0492	596051..598399 [+], 2349	294502602	hypothetical protein	TssI
13	YPZ3_0493	598412..598984 [+], 573	294502603	hypothetical protein
14	YPZ3_0494	599009..600631 [+], 1623	294502604	hypothetical protein
15	YPZ3_0495	600657..601760 [+], 1104	294502605	hypothetical protein
16	YPZ3_0496	601753..602370 [+], 618	294502606	hypothetical protein
17	YPZ3_0497	602752..603225 [+], 474	294502607	lipoprotein	TssJ
18	YPZ3_0498	603345..604700 [+], 1356	294502608	hypothetical protein	TssK
19	YPZ3_0499	604697..606307 [+], 1611	294502609	hypothetical protein	TssL
20	YPZ3_0500	606369..609809 [+], 3441	294502610	hypothetical protein	TssM
21	YPZ3_0501	609831..610184 [+], 354	294502611	hypothetical protein
22	YPZ3_0502	610440..613346 [-], 2907	294502612	ATP-dependent helicase HepA

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

YPK_3563 , YPK_3558

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPZ3_0487	589453..589971 [+], 519	294502597	hypothetical protein	YPK_3563
2	YPZ3_0492	596051..598399 [+], 2349	294502602	hypothetical protein	YPK_3558

Download FASTA format files

Proteins        Genes

N/A

N/A