SecReT6
I. Summary
SecReT6 ID391 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location974415..986167
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
7
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_0755970871..971293 [+], 423294502865CAAX amino terminal protease family protein 
2YPZ3_0756974415..974915 [+], 501294502866hypothetical protein  TssB
3YPZ3_0757974964..976508 [+], 1545294502867hypothetical protein  TssC
4YPZ3_0758976625..977872 [+], 1248294502868hypothetical protein  TssK
5YPZ3_0759977869..978555 [+], 687294502869hypothetical protein  TssL
6YPZ3_0760978555..980291 [+], 1737294502870putative OmpA-family membrane protein  TagL
7YPZ3_0761980295..980786 [+], 492294502871hypothetical protein  TssD
8YPZ3_0762981174..983816 [+], 2643294502872putative ATPase subunit of ATP-dependent protease  TssH
9YPZ3_0763983819..986167 [+], 2349294502873hypothetical protein  TssI
10YPZ3_0764986183..988480 [+], 2298294502874hypothetical protein 
11YPZ3_0765988467..989234 [+], 768294502875hypothetical protein 
12YPZ3_0766 (insB)989671..990027 [+], 357294502876insertion sequence protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPZ3_0761980295..980786 [+], 492294502871hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A