SecReT6
I. Summary
SecReT6 ID392 insolico
StrainYersinia pestis Z176003
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014029
Location1725910..1764433
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111121111
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPZ3_13301721618..1722370 [+], 753294503440enoyl-CoA hydratase 
2YPZ3_13311722373..1723161 [+], 789294503441putative short chain dehydrogenase 
3YPZ3_13321723356..1723688 [+], 333294503442hypothetical protein 
4YPZ3_13331724073..1724921 [+], 849294503443putative acyl transferase 
5YPZ3_13341725910..1726410 [+], 501294503444hypothetical protein  TssB
6YPZ3_13351726459..1727997 [+], 1539294503445hypothetical protein  TssC
7YPZ3_13361728114..1729361 [+], 1248294503446hypothetical protein  TssK
8YPZ3_13371729358..1730044 [+], 687294503447hypothetical protein  TssL
9YPZ3_13381730044..1731780 [+], 1737294503448hypothetical protein  TagL
10YPZ3_13391731784..1732275 [+], 492294503449hypothetical protein  TssD
11YPZ3_1340 (clpB3)1732693..1735341 [+], 2649294503450Clp ATPase  TssH
12YPZ3_13411735338..1737686 [+], 2349294503451hypothetical protein  TssI
13YPZ3_13421737701..1739923 [+], 2223294503452hypothetical protein 
14YPZ3_13431742016..1742651 [+], 636294503453hypothetical protein 
15YPZ3_13441742667..1744967 [+], 2301294503454putative kinase 
16YPZ3_13451744964..1745737 [+], 774294503455hypothetical protein 
17YPZ3_13461746167..1748350 [+], 2184294503456hypothetical protein 
18YPZ3_13471749726..1750046 [-], 321294503457transposase 
19YPZ3_13481751158..1752390 [+], 1233294503458hypothetical protein 
20YPZ3_13491752387..1755809 [+], 3423294503459hypothetical protein  TssM
21YPZ3_13501755853..1757454 [+], 1602294503460hypothetical protein  TssA
22YPZ3_13511757472..1758530 [+], 1059294503461hypothetical protein  PAAR
23YPZ3_13521758545..1759000 [+], 456294503462hypothetical protein 
24YPZ3_13531759221..1760984 [+], 1764294503463hypothetical protein  TssF
25YPZ3_13541760948..1762033 [+], 1086294503464hypothetical protein  TssG
26YPZ3_13551762008..1762589 [+], 582294503465hypothetical protein  TssJ
27YPZ3_13561762589..1763041 [+], 453294503466hypothetical protein  TssE
28YPZ3_13571763066..1764433 [+], 1368294503467hypothetical protein  TssA
29YPZ3_13581764645..1765268 [-], 624294503468hypothetical protein 
30YPZ3_13591765975..1767546 [+], 1572294503469ABC transporter ATP-binding protein 
31YPZ3_13601767774..1768427 [+], 654294503470hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPZ3_13391731784..1732275 [+], 492294503449hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU