 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ECA_RS16845 | 3824586..3827465 [-], 2880 | 499407454 | toprim domain-containing protein | |
2 | ECA_RS16850 | 3827578..3827973 [+], 396 | 499407455 | helix-turn-helix domain-containing protein | |
3 | ECA_RS16855 | 3828045..3828374 [+], 330 | 499407456 | type I toxin-antitoxin system SymE family toxin | |
4 | ECA_RS16860 | 3828371..3828715 [+], 345 | 499407461 | SymE family type I addiction module toxin | |
5 | ECA_RS16865 | 3828784..3829215 [-], 432 | 746454807 | hypothetical protein | |
6 | ECA_RS16870 | 3829572..3834074 [-], 4503 | pseudogene | RHS repeat protein | |
7 | ECA_RS16875 | 3834095..3835012 [-], 918 | 499407464 | DUF4123 domain-containing protein | |
8 | ECA_RS16880 | 3835009..3835965 [-], 957 | 499407465 | DUF4123 domain-containing protein | |
9 | ECA_RS16885 | 3836134..3836832 [-], 699 | 1172325015 | hypothetical protein | |
10 | ECA_RS16890 | 3836898..3837596 [-], 699 | 746244844 | hypothetical protein | |
11 | ECA_RS16895 | 3837677..3839050 [-], 1374 | 499407468 | PAAR domain-containing protein | PAAR |
12 | ECA_RS16900 | 3839060..3841096 [-], 2037 | 499407469 | type VI secretion system tip protein VgrG | TssI |
13 | ECA_RS16905 | 3841279..3841797 [-], 519 | 499407470 | Hcp family type VI secretion system effector | TssD |
14 | ECA_RS16915 | 3842363..3843718 [-], 1356 | 499407471 | sel1 repeat family protein | |
15 | ECA_RS16920 | 3843747..3845183 [-], 1437 | 499407472 | type VI secretion system ImpA family N-terminal domain-containing protein | TssA |
16 | ECA_RS16925 (tssM) | 3845233..3848730 [-], 3498 | 499407473 | type VI secretion system membrane subunit TssM | TssM |
17 | ECA_RS16930 (tssA) | 3848755..3850173 [-], 1419 | 499407474 | type VI secretion system protein TssA | TssA |
18 | ECA_RS16935 (tagO) | 3850185..3850745 [-], 561 | 499407475 | type VI secretion system-associated protein TagO | |
19 | ECA_RS16940 | 3850745..3852298 [-], 1554 | 499407476 | sigma-54-dependent Fis family transcriptional regulator | |
20 | ECA_RS16945 (tssH) | 3852301..3854898 [-], 2598 | 499407477 | type VI secretion system ATPase TssH | TssH |
21 | ECA_RS16950 | 3854912..3855688 [-], 777 | 499407478 | type IVB secretion system protein IcmH/DotU | TssL |
22 | ECA_RS16955 (tssK) | 3855704..3857041 [-], 1338 | 499407479 | type VI secretion system baseplate subunit TssK | TssK |
23 | ECA_RS16960 (tssJ) | 3857044..3857565 [-], 522 | 499407480 | type VI secretion system lipoprotein TssJ | TssJ |
24 | ECA_RS16965 (tagH) | 3857565..3858785 [-], 1221 | 499407481 | type VI secretion system-associated FHA domain protein TagH | Fha |
25 | ECA_RS16970 (tssG) | 3858788..3859786 [-], 999 | 499407482 | type VI secretion system baseplate subunit TssG | TssG |
26 | ECA_RS16975 (tssF) | 3859750..3861516 [-], 1767 | 499407483 | type VI secretion system baseplate subunit TssF | TssF |
27 | ECA_RS16980 (tssE) | 3861519..3861950 [-], 432 | 499407484 | type VI secretion system baseplate subunit TssE | TssE |
28 | ECA_RS16985 (tssC) | 3861956..3863434 [-], 1479 | 499407485 | type VI secretion system contractile sheath large subunit | TssC |
29 | ECA_RS16990 (tssB) | 3863466..3863969 [-], 504 | 499407486 | type VI secretion system contractile sheath small subunit | TssB |
30 | ECA_RS16995 | 3865039..3866442 [-], 1404 | 499407487 | efflux transporter outer membrane subunit | |
31 | ECA_RS17000 | 3866439..3869582 [-], 3144 | 499407488 | multidrug efflux RND transporter permease subunit | |
32 | ECA_RS17005 | 3869665..3870837 [-], 1173 | 499407489 | efflux RND transporter periplasmic adaptor subunit | |
33 | ECA_RS17010 | 3871027..3871593 [+], 567 | 499407490 | TetR/AcrR family transcriptional regulator | |
34 | ECA_RS17015 | 3872000..3872545 [-], 546 | 762207304 | histidine phosphatase family protein | |
35 | ECA_RS17020 | 3872983..3873474 [+], 492 | 499407492 | helix-turn-helix domain-containing protein | |
36 | ECA_RS17025 | 3873467..3874063 [+], 597 | 499407493 | putative adenosine monophosphate-protein transferase Fic | |
37 | ECA_RS23530 | 3874068..3874256 [+], 189 | pseudogene | capsid size determination protein | |
38 | ECA_RS23125 | 3874253..3874501 [+], 249 | 499407495 | ogr/Delta-like zinc finger family protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein