I. Summary
SecReT6 ID400 insolico
StrainAcinetobacter oleivorans DR1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1AOLE_121652612981..2614162 [-], 1182299770667cyanate permease 
2AOLE_121702614162..2614644 [-], 483299770668guanine deaminase 
3AOLE_121752614661..2615329 [-], 669299770669ankyrin repeat-containing protein 
4AOLE_121802615478..2616335 [+], 858299770670LysR family transcriptional regulator 
5AOLE_121852616332..2617282 [-], 951299770671D-alanyl-D-alanine carboxypeptidase 
6AOLE_121902617293..2617913 [-], 621299770672hypothetical protein 
7AOLE_121952617926..2618732 [-], 807299770673DotU family type IV / VI secretion system protein  TssL
8AOLE_122002618750..2620114 [-], 1365299770674type VI secretion protein  TssK
9AOLE_122052620131..2621225 [-], 1095299770675ImpA-related N-terminal family protein  TssA
10AOLE_122102621247..2623925 [-], 2679299770676chaperone ATPase  TssH
11AOLE_122152624076..2624339 [-], 264299770677hypothetical protein  PAAR
12AOLE_122202624356..2625123 [-], 768299770678OmpA/MotB domain-containing protein  TagL
13AOLE_122252625126..2626085 [-], 960299770679hypothetical protein 
14AOLE_122302626123..2629944 [-], 3822299770680type VI secretion protein IcmF  TssM
15AOLE_122352630169..2630300 [+], 132299770681hypothetical protein 
16AOLE_122402631381..2632379 [-], 999299770682hypothetical protein  TssG
17AOLE_122452632343..2634154 [-], 1812299770683type VI secretion protein  TssF
18AOLE_122502634171..2634647 [-], 477299770684type VI secretion system lysozyme-like protein  TssE
19AOLE_122552634726..2635229 [-], 504299770685type VI secretion system effector  TssD
20AOLE_122602635279..2636760 [-], 1482299770686type VI secretion protein EvpB  TssC
21AOLE_122652636753..2637256 [-], 504299770687type VI secretion protein  TssB
22AOLE_122702637273..2637962 [-], 690299770688hypothetical protein 
23AOLE_122752638655..2639560 [-], 906299770689hypothetical protein 
24AOLE_122802639577..2640347 [-], 771299770690hypothetical protein 
25AOLE_122852640399..2641142 [-], 744299770691hypothetical protein 
26AOLE_122902641144..2643897 [-], 2754299770692hypothetical protein 
27AOLE_122952643890..2644282 [-], 393299770693hypothetical protein 
28AOLE_123002644279..2644809 [-], 531299770694hypothetical protein 
29AOLE_123052644811..2647438 [-], 2628299770695hypothetical protein  TssI
30AOLE_123102647622..2648122 [-], 501299770696hypothetical protein 
31AOLE_123152648211..2648747 [-], 537299770697hypothetical protein 
32AOLE_123202648825..2649343 [-], 519299770698hypothetical protein 
33AOLE_123252649361..2650224 [-], 864299770699hypothetical protein 
34AOLE_123302650619..2651602 [-], 984299770700hypothetical protein 
35AOLE_123352651617..2653017 [-], 1401299770701hypothetical protein 
36AOLE_123402653017..2655914 [-], 2898299770702hypothetical protein  TssI
37AOLE_123452656021..2656917 [-], 897299770703LysR family transcriptional regulator 
38AOLE_123502657016..2658356 [+], 1341299770704MFS-family transporter 
39AOLE_123552658349..2658750 [+], 402299770705hypothetical protein 
40AOLE_123602658846..2659790 [+], 945299770706Taurine transport system permease protein tauC 
41AOLE_123652659790..2660671 [+], 882299770707ABC transporter ATP-binding protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1AOLE_122552634726..2635229 [-], 504299770685type VI secretion system effector A1S_1296

Download FASTA format files
Proteins        Genes