I. Summary
SecReT6 ID401 insolico
StrainErwinia billingiae Eb661
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1EbC_04000476900..477667 [+], 768300714988IclR family transcripitonal regulator 
2EbC_04010477781..478365 [+], 585300714989hypothetical protein 
3EbC_04020478435..480129 [-], 1695300714990D-lactate dehydrogenase 
4EbC_04030480273..480656 [-], 384300714991hypothetical protein 
5EbC_04040 (umuD)480670..481089 [-], 420300714992UmuD protein 
6EbC_04050481593..482090 [+], 498300714993hypothetical protein  TssB
7EbC_04060482119..483666 [+], 1548300714994hypothetical protein  TssC
8EbC_04070483679..485013 [+], 1335300714995hypothetical protein  TssK
9EbC_04080485010..485684 [+], 675300714996hypothetical protein  TssL
10EbC_04090485681..487375 [+], 1695300714997hypothetical protein  TagL
11EbC_04100487379..487870 [+], 492300714998hypothetical protein  TssD
12EbC_04110 (clpA)488166..490832 [+], 2667300714999Clp ATPase  TssH
13EbC_04120490829..493330 [+], 2502300715000Rhs element Vgr family protein  TssI
14EbC_04130493390..495060 [+], 1671300715001hypothetical protein 
15EbC_04140495057..496160 [+], 1104300715002hypothetical protein 
16EbC_04150496233..497315 [+], 1083300715003hypothetical protein 
17EbC_04160497732..498856 [+], 1125300715004hypothetical protein 
18EbC_04170498853..502260 [+], 3408300715005hypothetical protein  TssM
19EbC_04180502260..503855 [+], 1596300715006hypothetical protein  TssA
20EbC_04190503893..505647 [+], 1755300715007hypothetical protein  TssF
21EbC_04200505656..506696 [+], 1041300715008hypothetical protein  TssG
22EbC_04210506701..507219 [+], 519300715009type VI secretion system family protein, lipoprotein VCA0113  TssJ
23EbC_04220507219..507692 [+], 474300715010type VI secretion system, lysozyme-related family protein  TssE
24EbC_04230507685..509085 [+], 1401300715011ImpA domain-containing protein  TssA
25EbC_04240509489..510067 [-], 579300715012TetR family transcripitonal regulator 
26EbC_04250 (dsbD)510131..511855 [-], 1725300715013Thiol:disulfide interchange protein DsbD 
27EbC_04260 (dcuA)512063..513364 [-], 1302300715014Anaerobic C4-dicarboxylate transporter 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1EbC_04100487379..487870 [+], 492300714998hypothetical protein EC042_4529

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Proteins        Genes
(1) De Maayer P et al. (2011). Comparative genomics of the Type VI secretion systems of Pantoea and Erwinia species reveals the presence of putative effector islands that may be translocated by the VgrG and Hcp proteins. BMC Genomics. 12:576. [PudMed:22115407] in_silico
in_silico This literature contains bioinformatics investigation