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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | EbC_39230 | 4368780..4369772 [+], 993 | 300718498 | LacI family transcriptional regulator | |
2 | EbC_39240 | 4369923..4370864 [+], 942 | 300718499 | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit | |
3 | EbC_39250 | 4370951..4372282 [+], 1332 | 300718500 | major facilitator superfamily protein | |
4 | EbC_39260 | 4372900..4374402 [+], 1503 | 300718501 | OmpA family protein | TagL |
5 | EbC_39270 | 4374417..4376015 [+], 1599 | 300718502 | hypothetical protein | |
6 | EbC_39280 | 4376012..4376842 [+], 831 | 300718503 | hypothetical protein | |
7 | EbC_39290 | 4377292..4379364 [+], 2073 | 300718504 | fusaric acid resistance protein | |
8 | EbC_39300 | 4379399..4379686 [-], 288 | 300718505 | XRE family transcripitonal regulator | |
9 | EbC_39310 (api4) | 4379689..4380357 [-], 669 | 300718506 | hypothetical protein | |
10 | EbC_39320 | 4380350..4381066 [-], 717 | 300718507 | phage intergrase | |
11 | EbC_39330 | 4382722..4385220 [+], 2499 | 300718508 | type VI secretion system, Rhs element Vgr protein | TssI |
12 | EbC_39340 | 4385237..4386190 [+], 954 | 300718509 | hypothetical protein | |
13 | EbC_39350 | 4386193..4387059 [+], 867 | 300718510 | hypothetical protein | |
14 | EbC_39360 | 4387063..4389099 [+], 2037 | 300718511 | hypothetical protein | |
15 | EbC_39370 | 4389096..4389353 [+], 258 | 300718512 | hypothetical protein | PAAR |
16 | EbC_39380 | 4389353..4390792 [+], 1440 | 300718513 | hypothetical protein | |
17 | EbC_39390 | 4390795..4393893 [+], 3099 | 300718514 | type VI secretion system, ImcF domain-containing protein | TssM |
18 | EbC_39400 | 4393907..4395682 [+], 1776 | 300718515 | type VI secretion protein, VCA0110 family | TssF |
19 | EbC_39410 | 4395682..4396707 [+], 1026 | 300718516 | hypothetical protein | TssG |
20 | EbC_39420 | 4396733..4396867 [+], 135 | 300718517 | hypothetical protein | |
21 | EbC_39430 | 4397024..4397896 [+], 873 | 300718518 | hypothetical protein | |
22 | EbC_39440 | 4398274..4398603 [+], 330 | 300718519 | hypothetical protein | |
23 | EbC_39450 (hsdR) | 4398927..4401362 [+], 2436 | 300718520 | type I restriction enzyme EcoAI R protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein