 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | RPSI07_mp0647 | 794068..794910 [+], 843 | 300693657 | amino-acid-binding periplasmic ABC transporter protein | |
2 | RPSI07_mp0648 | 795142..796086 [-], 945 | 300693658 | hypothetical protein | |
3 | RPSI07_mp0649 | 796108..796893 [-], 786 | 300693659 | hypothetical protein | |
4 | RPSI07_mp0650 | 797066..798094 [-], 1029 | 300693660 | hypothetical protein | |
5 | RPSI07_mp0651 | 798603..801947 [-], 3345 | 300693661 | rhs element vgr-like protein | TssI |
6 | RPSI07_mp0652 | 802006..802797 [-], 792 | 300693662 | secretion system protein | TssL |
7 | RPSI07_mp0653 | 802794..804140 [-], 1347 | 300693663 | hypothetical protein | TssK |
8 | RPSI07_mp0654 | 804196..804777 [-], 582 | 300693664 | hypothetical protein | TssJ |
9 | RPSI07_mp0655 | 805150..805806 [+], 657 | 300693665 | hypothetical protein | |
10 | RPSI07_mp0656 | 805843..806355 [+], 513 | 300693666 | hypothetical protein | TssB |
11 | RPSI07_mp0657 | 806348..807838 [+], 1491 | 300693667 | hypothetical protein | TssC |
12 | RPSI07_mp0658 (sciK) | 807927..808430 [+], 504 | 300693668 | secretion system protein (evpc-like), hemolysin-coregulated protein | TssD |
13 | RPSI07_mp0659 | 808491..808964 [+], 474 | 300693669 | secretion system protein | TssE |
14 | RPSI07_mp0660 | 809027..810877 [+], 1851 | 300693670 | type VI secretion protein (duf879) | TssF |
15 | RPSI07_mp0661 | 810841..811944 [+], 1104 | 300693671 | type VI secretion protein, vc_a0111 family | TssG |
16 | RPSI07_mp0662 (clpB) | 811977..814694 [+], 2718 | 300693672 | chaperone clpb | TssH |
17 | RPSI07_mp0663 | 814715..817465 [+], 2751 | 300693673 | rhs element vgr-related protein | TssI |
18 | RPSI07_mp0665 | 818443..821793 [+], 3351 | 300693674 | hypothetical protein | |
19 | RPSI07_mp0667 | 822743..823744 [+], 1002 | 300693675 | hypothetical protein | |
20 | RPSI07_mp0668 | 823767..824930 [-], 1164 | 300693676 | transposase | |
21 | RPSI07_mp0669 | 824996..825367 [-], 372 | 300693677 | transposase, is4-like | |
22 | RPSI07_mp0671 | 825865..826932 [+], 1068 | 300693678 | hypothetical protein | |
23 | RPSI07_mp0672 | 826941..828038 [+], 1098 | 300693679 | hypothetical protein | |
24 | RPSI07_mp0673 | 828373..829503 [+], 1131 | 300693680 | hypothetical protein | |
25 | RPSI07_mp0674 | 829487..830860 [+], 1374 | 300693681 | rhs element vgr-related protein (fragment) | TssI |
26 | RPSI07_mp0675 | 830839..830964 [+], 126 | 300693682 | hypothetical protein | |
27 | RPSI07_mp0676 | 831006..831332 [-], 327 | 300693683 | hypothetical protein | |
28 | RPSI07_mp0677 | 831373..831786 [+], 414 | 300693684 | hypothetical protein | |
29 | RPSI07_mp0678 | 831915..833258 [+], 1344 | 300693685 | lipoprotein yddw | |
30 | RPSI07_mp0679 | 833457..834467 [+], 1011 | 300693686 | hypothetical protein | TssA |
31 | RPSI07_mp0680 | 834653..835105 [-], 453 | 300693687 | hypothetical protein | |
32 | RPSI07_mp0681 | 835136..836020 [-], 885 | 300693688 | hypothetical protein | |
33 | RPSI07_mp0682 | 836020..836592 [-], 573 | 300693689 | hypothetical protein | |
34 | RPSI07_mp0683 | 836592..838163 [-], 1572 | 300693690 | hypothetical protein | |
35 | RPSI07_mp0684 | 838218..839090 [-], 873 | 300693691 | hypothetical protein | |
36 | RPSI07_mp0685 | 839738..840580 [-], 843 | 300693692 | outer membrane protein; ompa/motb domain | TagL |
37 | RPSI07_mp0686 | 840577..841563 [-], 987 | 300693693 | hypothetical protein | |
38 | RPSI07_mp0687 | 841560..845489 [-], 3930 | 300693694 | secretion system protein | TssM |
39 | RPSI07_mp0688 | 845527..846984 [-], 1458 | 300693695 | hypothetical protein | |
40 | RPSI07_mp0689 | 847025..847294 [-], 270 | 300693696 | hypothetical protein | PAAR |
41 | RPSI07_mp0690 | 847334..848146 [-], 813 | 300693697 | carboxypeptidase | |
42 | RPSI07_mp0691 | 848468..849259 [+], 792 | 300693698 | transmembrane protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein