 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | NIDE1965 | 1876339..1876842 [+], 504 | 302037292 | hypothetical protein | |
2 | NIDE1966 | 1876898..1877242 [-], 345 | 302037293 | hypothetical protein | |
3 | NIDE1967 | 1877629..1877820 [-], 192 | 302037294 | hypothetical protein | |
4 | NIDE1968 | 1877829..1878935 [+], 1107 | 302037295 | hypothetical protein | |
5 | NIDE1969 | 1878944..1880197 [+], 1254 | 302037296 | hypothetical protein | Fha |
6 | NIDE1970 | 1880217..1880660 [+], 444 | 302037297 | hypothetical protein | TssJ |
7 | NIDE1971 | 1880685..1882025 [+], 1341 | 302037298 | hypothetical protein | TssK |
8 | NIDE1972 | 1882032..1882730 [+], 699 | 302037299 | hypothetical protein | TssL |
9 | NIDE1973 | 1882727..1886356 [+], 3630 | 302037300 | hypothetical protein | TssM |
10 | NIDE1974 | 1886362..1887312 [+], 951 | 302037301 | hypothetical protein | |
11 | NIDE1975 | 1887496..1888296 [+], 801 | 302037302 | hypothetical protein | TagJ |
12 | NIDE1976 | 1888312..1889430 [+], 1119 | 302037303 | hypothetical protein | TssA |
13 | NIDE1977 | 1889454..1889987 [+], 534 | 302037304 | hypothetical protein | TssB |
14 | NIDE1978 | 1889990..1891483 [+], 1494 | 302037305 | hypothetical protein | TssC |
15 | NIDE1979 | 1891974..1892429 [+], 456 | 302037306 | hypothetical protein | TssD |
16 | NIDE1980 | 1892633..1893430 [+], 798 | 302037307 | hypothetical protein | |
17 | NIDE1981 | 1893508..1893915 [+], 408 | 302037308 | hypothetical protein | |
18 | NIDE1982 | 1893973..1894809 [+], 837 | 302037309 | hypothetical protein | TssE |
19 | NIDE1983 | 1894809..1896623 [+], 1815 | 302037310 | hypothetical protein | TssF |
20 | NIDE1984 | 1896587..1897651 [+], 1065 | 302037311 | hypothetical protein | TssG |
21 | NIDE1985 (clpV1) | 1897676..1900405 [+], 2730 | 302037312 | type VI secretion AtPase, ClpV1 family | TssH |
22 | NIDE1986 | 1900470..1901123 [+], 654 | 302037313 | hypothetical protein | |
23 | NIDE1987 | 1901360..1903612 [+], 2253 | 302037314 | hypothetical protein | TssI |
24 | NIDE1988 | 1903650..1904150 [+], 501 | 302037315 | hypothetical protein | |
25 | NIDE1989 | 1904219..1905493 [+], 1275 | 302037316 | hypothetical protein | |
26 | NIDE1990 | 1905481..1906605 [+], 1125 | 302037317 | hypothetical protein | |
27 | NIDE1991 | 1906605..1907642 [+], 1038 | 302037318 | hypothetical protein | |
28 | NIDE1992 | 1907645..1908652 [+], 1008 | 302037319 | hypothetical protein | |
29 | NIDE1993 | 1908703..1909446 [+], 744 | 302037320 | hypothetical protein | |
30 | NIDE1994 | 1909502..1909678 [-], 177 | 302037321 | hypothetical protein | |
31 | NIDE1996 | 1909835..1910083 [+], 249 | 302037322 | hypothetical protein | |
32 | NIDE1997 | 1910190..1911167 [+], 978 | 302037323 | hypothetical protein | TagL |
33 | NIDE1998 | 1911483..1911665 [+], 183 | 302037324 | hypothetical protein | |
34 | NIDE1999 (istA) | 1912071..1913408 [+], 1338 | 302037325 | transposase for insertion sequence element IS21 | |
35 | NIDE2000 (istB) | 1913405..1914184 [+], 780 | 302037326 | insertion sequence Is21 putative ATP-binding protein | |
36 | NIDE2001 | 1914286..1914516 [-], 231 | 302037327 | hypothetical protein | |
37 | NIDE2002 | 1914600..1915835 [+], 1236 | 302037328 | hypothetical protein | |
38 | NIDE2003 | 1915895..1916158 [-], 264 | 302037329 | Txe/YoeB family addiction module toxin | |
39 | NIDE2004 | 1916155..1916397 [-], 243 | 302037330 | axe/YefM family addiction module antitoxin | |
40 | NIDE2005 | 1916734..1917432 [+], 699 | 302037331 | hypothetical protein | |
41 | NIDE2006 | 1917503..1918036 [+], 534 | 302037332 | hypothetical protein | |
42 | NIDE2007 | 1918206..1918844 [+], 639 | 302037333 | hypothetical protein | |
43 | NIDE2008 | 1919174..1920565 [-], 1392 | 302037334 | putative outer membrane autotransporter | |
44 | NIDE2010 | 1920679..1922685 [+], 2007 | 302037335 | hypothetical protein | |
45 | NIDE2011 | 1922707..1924278 [-], 1572 | 302037336 | hypothetical protein | TssC |
46 | NIDE2013 | 1924549..1924806 [+], 258 | 302037337 | putative transposase InsN for insertion sequence element IS911 | |
47 | NIDE2014 | 1924847..1925677 [+], 831 | 302037338 | putative transposase InsF for insertion sequence IS3 | |
48 | NIDE2015 | 1926020..1926205 [+], 186 | 302037339 | hypothetical protein | |
49 | NIDE2016 | 1926220..1926975 [+], 756 | 302037340 | hypothetical protein | |
50 | NIDE2017 | 1927002..1927772 [+], 771 | 302037341 | hypothetical protein | |
51 | NIDE2019 | 1927859..1928806 [+], 948 | 302037342 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein