SecReT6
I. Summary
SecReT6 ID407 insolico
StrainCandidatus Nitrospira defluvii
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_014355
Location1880217..1924278
Comment
FunctionN/A
T6SS TypeType i; subtype i4a
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111111211
ComponentTssGTssJTssKTssM
Number1111
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1NIDE19651876339..1876842 [+], 504302037292hypothetical protein 
2NIDE19661876898..1877242 [-], 345302037293hypothetical protein 
3NIDE19671877629..1877820 [-], 192302037294hypothetical protein 
4NIDE19681877829..1878935 [+], 1107302037295hypothetical protein 
5NIDE19691878944..1880197 [+], 1254302037296hypothetical protein  Fha
6NIDE19701880217..1880660 [+], 444302037297hypothetical protein  TssJ
7NIDE19711880685..1882025 [+], 1341302037298hypothetical protein  TssK
8NIDE19721882032..1882730 [+], 699302037299hypothetical protein  TssL
9NIDE19731882727..1886356 [+], 3630302037300hypothetical protein  TssM
10NIDE19741886362..1887312 [+], 951302037301hypothetical protein 
11NIDE19751887496..1888296 [+], 801302037302hypothetical protein  TagJ
12NIDE19761888312..1889430 [+], 1119302037303hypothetical protein  TssA
13NIDE19771889454..1889987 [+], 534302037304hypothetical protein  TssB
14NIDE19781889990..1891483 [+], 1494302037305hypothetical protein  TssC
15NIDE19791891974..1892429 [+], 456302037306hypothetical protein  TssD
16NIDE19801892633..1893430 [+], 798302037307hypothetical protein 
17NIDE19811893508..1893915 [+], 408302037308hypothetical protein 
18NIDE19821893973..1894809 [+], 837302037309hypothetical protein  TssE
19NIDE19831894809..1896623 [+], 1815302037310hypothetical protein  TssF
20NIDE19841896587..1897651 [+], 1065302037311hypothetical protein  TssG
21NIDE1985 (clpV1)1897676..1900405 [+], 2730302037312type VI secretion AtPase, ClpV1 family  TssH
22NIDE19861900470..1901123 [+], 654302037313hypothetical protein 
23NIDE19871901360..1903612 [+], 2253302037314hypothetical protein  TssI
24NIDE19881903650..1904150 [+], 501302037315hypothetical protein 
25NIDE19891904219..1905493 [+], 1275302037316hypothetical protein 
26NIDE19901905481..1906605 [+], 1125302037317hypothetical protein 
27NIDE19911906605..1907642 [+], 1038302037318hypothetical protein 
28NIDE19921907645..1908652 [+], 1008302037319hypothetical protein 
29NIDE19931908703..1909446 [+], 744302037320hypothetical protein 
30NIDE19941909502..1909678 [-], 177302037321hypothetical protein 
31NIDE19961909835..1910083 [+], 249302037322hypothetical protein 
32NIDE19971910190..1911167 [+], 978302037323hypothetical protein  TagL
33NIDE19981911483..1911665 [+], 183302037324hypothetical protein 
34NIDE1999 (istA)1912071..1913408 [+], 1338302037325transposase for insertion sequence element IS21 
35NIDE2000 (istB)1913405..1914184 [+], 780302037326insertion sequence Is21 putative ATP-binding protein 
36NIDE20011914286..1914516 [-], 231302037327hypothetical protein 
37NIDE20021914600..1915835 [+], 1236302037328hypothetical protein 
38NIDE20031915895..1916158 [-], 264302037329Txe/YoeB family addiction module toxin 
39NIDE20041916155..1916397 [-], 243302037330axe/YefM family addiction module antitoxin 
40NIDE20051916734..1917432 [+], 699302037331hypothetical protein 
41NIDE20061917503..1918036 [+], 534302037332hypothetical protein 
42NIDE20071918206..1918844 [+], 639302037333hypothetical protein 
43NIDE20081919174..1920565 [-], 1392302037334putative outer membrane autotransporter 
44NIDE20101920679..1922685 [+], 2007302037335hypothetical protein 
45NIDE20111922707..1924278 [-], 1572302037336hypothetical protein  TssC
46NIDE20131924549..1924806 [+], 258302037337putative transposase InsN for insertion sequence element IS911 
47NIDE20141924847..1925677 [+], 831302037338putative transposase InsF for insertion sequence IS3 
48NIDE20151926020..1926205 [+], 186302037339hypothetical protein 
49NIDE20161926220..1926975 [+], 756302037340hypothetical protein 
50NIDE20171927002..1927772 [+], 771302037341hypothetical protein 
51NIDE20191927859..1928806 [+], 948302037342hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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Genomics & Bioinformatics Group in MML, SJTU