I. Summary

SecReT6 ID	414
Strain	Pseudoalteromonas sp. SM9913
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_014800
Location	228374..250754
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PSM_B0201	223786..224151 [+], 366	315123144	hypothetical protein
2	PSM_B0202	224199..224543 [-], 345	315123145	hypothetical protein
3	PSM_B0203	224720..226693 [-], 1974	315123146	serine/threonine protein kinase
4	PSM_B0204	227087..228358 [+], 1272	315123147	FHA domain-containing protein	Fha
5	PSM_B0205	228374..228838 [+], 465	315123148	hypothetical protein	TssJ
6	PSM_B0206	228854..230182 [+], 1329	315123149	hypothetical protein	TssK
7	PSM_B0207	230205..231485 [+], 1281	315123150	hypothetical protein	TssL
8	PSM_B0208	231615..235004 [+], 3390	315123151	ImcF domain-containing protein	TssM
9	PSM_B0209	234986..235714 [+], 729	315123152	hypothetical protein
10	PSM_B0210	235707..236504 [+], 798	315123153	protein serine/threonine phosphatase
11	PSM_B0211	236708..237823 [+], 1116	315123154	ImpA domain-containing protein	TssA
12	PSM_B0212	237839..238342 [+], 504	315123155	hypothetical protein	TssB
13	PSM_B0213	238339..239829 [+], 1491	315123156	hypothetical protein	TssC
14	PSM_B0214	239867..241393 [+], 1527	315123157	hypothetical protein	TssC
15	PSM_B0215	241396..242175 [+], 780	315123158	virulence protein, SciE type	TagJ
16	PSM_B0216	242191..242676 [+], 486	315123159	hypothetical protein	TssE
17	PSM_B0217	242673..244499 [+], 1827	315123160	hypothetical protein	TssF
18	PSM_B0218	244463..245485 [+], 1023	315123161	hypothetical protein	TssG
19	PSM_B0219	245509..248127 [+], 2619	315123162	ATPase	TssH
20	PSM_B0220	248348..248827 [+], 480	315123163	hypothetical protein	TssD
21	PSM_B0221	248901..250754 [+], 1854	315123164	Rhs element Vgr protein	TssI
22	PSM_B0222	250757..251113 [+], 357	315123165	hypothetical protein
23	PSM_B0223	251152..251442 [+], 291	315123166	hypothetical protein	PAAR
24	PSM_B0224	251445..252470 [+], 1026	315123167	hypothetical protein
25	PSM_B0225	252467..253312 [+], 846	315123168	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VPA1027

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PSM_B0220	248348..248827 [+], 480	315123163	hypothetical protein	VPA1027

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Proteins        Genes

N/A

N/A