I. Summary
SecReT6 ID414 insolico
StrainPseudoalteromonas sp. SM9913
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSM_B0201223786..224151 [+], 366315123144hypothetical protein 
2PSM_B0202224199..224543 [-], 345315123145hypothetical protein 
3PSM_B0203224720..226693 [-], 1974315123146serine/threonine protein kinase 
4PSM_B0204227087..228358 [+], 1272315123147FHA domain-containing protein  Fha
5PSM_B0205228374..228838 [+], 465315123148hypothetical protein  TssJ
6PSM_B0206228854..230182 [+], 1329315123149hypothetical protein  TssK
7PSM_B0207230205..231485 [+], 1281315123150hypothetical protein  TssL
8PSM_B0208231615..235004 [+], 3390315123151ImcF domain-containing protein  TssM
9PSM_B0209234986..235714 [+], 729315123152hypothetical protein 
10PSM_B0210235707..236504 [+], 798315123153protein serine/threonine phosphatase 
11PSM_B0211236708..237823 [+], 1116315123154ImpA domain-containing protein  TssA
12PSM_B0212237839..238342 [+], 504315123155hypothetical protein  TssB
13PSM_B0213238339..239829 [+], 1491315123156hypothetical protein  TssC
14PSM_B0214239867..241393 [+], 1527315123157hypothetical protein  TssC
15PSM_B0215241396..242175 [+], 780315123158virulence protein, SciE type  TagJ
16PSM_B0216242191..242676 [+], 486315123159hypothetical protein  TssE
17PSM_B0217242673..244499 [+], 1827315123160hypothetical protein  TssF
18PSM_B0218244463..245485 [+], 1023315123161hypothetical protein  TssG
19PSM_B0219245509..248127 [+], 2619315123162ATPase  TssH
20PSM_B0220248348..248827 [+], 480315123163hypothetical protein  TssD
21PSM_B0221248901..250754 [+], 1854315123164Rhs element Vgr protein  TssI
22PSM_B0222250757..251113 [+], 357315123165hypothetical protein 
23PSM_B0223251152..251442 [+], 291315123166hypothetical protein  PAAR
24PSM_B0224251445..252470 [+], 1026315123167hypothetical protein 
25PSM_B0225252467..253312 [+], 846315123168hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSM_B0220248348..248827 [+], 480315123163hypothetical protein VPA1027

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Proteins        Genes