I. Summary

SecReT6 ID	417
Strain	Variovorax paradoxus EPS
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_014931
Location	607752..657987
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Varpa_0548	603418..605310 [-], 1893	319791240	integral membrane sensor hybrid histidine kinase
2	Varpa_0549	605457..606515 [+], 1059	319791241	phosphonate ABC transporter periplasmic phosphonate-binding protein
3	Varpa_0550	606583..607608 [+], 1026	319791242	phosphonate ABC transporter periplasmic phosphonate-binding protein
4	Varpa_0551	607752..609083 [+], 1332	319791243	type VI secretion protein	TssK
5	Varpa_0552	609312..610676 [+], 1365	319791244	DotU family type IV/VI secretion system protein	TssL
6	Varpa_0553	610673..614272 [+], 3600	319791245	type VI secretion protein icmf	TssM
7	Varpa_0554	614269..614913 [+], 645	319791246	type VI secretioN-associated protein
8	Varpa_0555	614910..615749 [+], 840	319791247	hypothetical protein
9	Varpa_0556	615746..617689 [+], 1944	319791248	serine/threonine protein kinase
10	Varpa_0557	617750..619342 [+], 1593	319791249	3d domain-containing protein
11	Varpa_0558	619372..620121 [+], 750	319791250	hypothetical protein
12	Varpa_0559	620150..621304 [+], 1155	319791251	hypothetical protein
13	Varpa_0560	621430..623403 [+], 1974	319791252	peptidase c14 caspase catalytic subunit p20
14	Varpa_0561	623463..624020 [+], 558	319791253	hypothetical protein
15	Varpa_0562	624022..624876 [+], 855	319791254	virulence protein scie type	TagJ
16	Varpa_0563	624878..625393 [+], 516	319791255	type VI secretion system lysozyme-like protein	TssE
17	Varpa_0564	625402..627294 [+], 1893	319791256	type VI secretion protein	TssF
18	Varpa_0565	627258..628340 [+], 1083	319791257	type VI secretion protein	TssG
19	Varpa_0566	628337..629671 [+], 1335	319791258	type 11 methyltransferase
20	Varpa_0567	629741..632521 [+], 2781	319791259	type VI secretion ATPase, clpv1 family	TssH
21	Varpa_0568	632573..635614 [+], 3042	319791260	type VI secretion system vgr family protein	TssI
22	Varpa_0569	635629..638226 [+], 2598	319791261	hypothetical protein
23	Varpa_0570	638288..639346 [+], 1059	319791262	pentapeptide repeat-containing protein
24	Varpa_0571	639379..640023 [+], 645	319791263	hypothetical protein
25	Varpa_0572	640037..640432 [+], 396	319791264	hypothetical protein
26	Varpa_0573	640520..642898 [+], 2379	319791265	type VI secretion system vgr family protein	TssI
27	Varpa_0574	642922..643404 [+], 483	319791266	hypothetical protein
28	Varpa_0575	643429..644526 [+], 1098	319791267	hypothetical protein
29	Varpa_0576	644530..645555 [+], 1026	319791268	3-oxoacyL-(acyl carrier protein) synthase
30	Varpa_0577	645555..646655 [+], 1101	319791269	hypothetical protein
31	Varpa_0578	646674..647576 [+], 903	319791270	hypothetical protein
32	Varpa_0579	647573..648847 [+], 1275	319791271	hypothetical protein
33	Varpa_0580	648855..649007 [+], 153	319791272	hypothetical protein
34	Varpa_0581	649130..650851 [+], 1722	319791273	fha domain containing protein	Fha
35	Varpa_0582	650944..651753 [+], 810	319791274	protein serine/threonine phosphatase
36	Varpa_0583	651741..652337 [-], 597	319791275	hypothetical protein
37	Varpa_0584	652454..652936 [-], 483	319791276	hypothetical protein	TssD
38	Varpa_0585	653074..654567 [-], 1494	319791277	EvpB family type VI secretion protein	TssC
39	Varpa_0586	654624..655139 [-], 516	319791278	type VI secretion protein	TssB
40	Varpa_0587	655206..656234 [-], 1029	319791279	ImpA family type VI secretion-associated protein	TssA
41	Varpa_0588	656306..656827 [+], 522	319791280	type VI secretion lipoprotein	TssJ
42	Varpa_0589	656848..657987 [-], 1140	319791281	hypothetical protein	TssM
43	Varpa_0590	657984..659309 [-], 1326	319791282	type IV / vi secretion system, dotu
44	Varpa_0591	659552..660244 [+], 693	319791283	two component LuxR family transcriptional regulator
45	Varpa_0592	660417..661730 [-], 1314	319791284	FAD-binding monooxygenase protein
46	Varpa_0593	661780..662064 [-], 285	319791285	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

N/A