I. Summary
SecReT6 ID417 insolico
StrainVariovorax paradoxus EPS
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Varpa_0548603418..605310 [-], 1893319791240integral membrane sensor hybrid histidine kinase 
2Varpa_0549605457..606515 [+], 1059319791241phosphonate ABC transporter periplasmic phosphonate-binding protein 
3Varpa_0550606583..607608 [+], 1026319791242phosphonate ABC transporter periplasmic phosphonate-binding protein 
4Varpa_0551607752..609083 [+], 1332319791243type VI secretion protein  TssK
5Varpa_0552609312..610676 [+], 1365319791244DotU family type IV/VI secretion system protein  TssL
6Varpa_0553610673..614272 [+], 3600319791245type VI secretion protein icmf  TssM
7Varpa_0554614269..614913 [+], 645319791246type VI secretioN-associated protein 
8Varpa_0555614910..615749 [+], 840319791247hypothetical protein 
9Varpa_0556615746..617689 [+], 1944319791248serine/threonine protein kinase 
10Varpa_0557617750..619342 [+], 15933197912493d domain-containing protein 
11Varpa_0558619372..620121 [+], 750319791250hypothetical protein 
12Varpa_0559620150..621304 [+], 1155319791251hypothetical protein 
13Varpa_0560621430..623403 [+], 1974319791252peptidase c14 caspase catalytic subunit p20 
14Varpa_0561623463..624020 [+], 558319791253hypothetical protein 
15Varpa_0562624022..624876 [+], 855319791254virulence protein scie type  TagJ
16Varpa_0563624878..625393 [+], 516319791255type VI secretion system lysozyme-like protein  TssE
17Varpa_0564625402..627294 [+], 1893319791256type VI secretion protein  TssF
18Varpa_0565627258..628340 [+], 1083319791257type VI secretion protein  TssG
19Varpa_0566628337..629671 [+], 1335319791258type 11 methyltransferase 
20Varpa_0567629741..632521 [+], 2781319791259type VI secretion ATPase, clpv1 family  TssH
21Varpa_0568632573..635614 [+], 3042319791260type VI secretion system vgr family protein  TssI
22Varpa_0569635629..638226 [+], 2598319791261hypothetical protein 
23Varpa_0570638288..639346 [+], 1059319791262pentapeptide repeat-containing protein 
24Varpa_0571639379..640023 [+], 645319791263hypothetical protein 
25Varpa_0572640037..640432 [+], 396319791264hypothetical protein 
26Varpa_0573640520..642898 [+], 2379319791265type VI secretion system vgr family protein  TssI
27Varpa_0574642922..643404 [+], 483319791266hypothetical protein 
28Varpa_0575643429..644526 [+], 1098319791267hypothetical protein 
29Varpa_0576644530..645555 [+], 10263197912683-oxoacyL-(acyl carrier protein) synthase 
30Varpa_0577645555..646655 [+], 1101319791269hypothetical protein 
31Varpa_0578646674..647576 [+], 903319791270hypothetical protein 
32Varpa_0579647573..648847 [+], 1275319791271hypothetical protein 
33Varpa_0580648855..649007 [+], 153319791272hypothetical protein 
34Varpa_0581649130..650851 [+], 1722319791273fha domain containing protein  Fha
35Varpa_0582650944..651753 [+], 810319791274protein serine/threonine phosphatase 
36Varpa_0583651741..652337 [-], 597319791275hypothetical protein 
37Varpa_0584652454..652936 [-], 483319791276hypothetical protein  TssD
38Varpa_0585653074..654567 [-], 1494319791277EvpB family type VI secretion protein  TssC
39Varpa_0586654624..655139 [-], 516319791278type VI secretion protein  TssB
40Varpa_0587655206..656234 [-], 1029319791279ImpA family type VI secretion-associated protein  TssA
41Varpa_0588656306..656827 [+], 522319791280type VI secretion lipoprotein  TssJ
42Varpa_0589656848..657987 [-], 1140319791281hypothetical protein  TssM
43Varpa_0590657984..659309 [-], 1326319791282type IV / vi secretion system, dotu 
44Varpa_0591659552..660244 [+], 693319791283two component LuxR family transcriptional regulator 
45Varpa_0592660417..661730 [-], 1314319791284FAD-binding monooxygenase protein 
46Varpa_0593661780..662064 [-], 285319791285hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.