 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | Varpa_0548 | 603418..605310 [-], 1893 | 319791240 | integral membrane sensor hybrid histidine kinase | |
2 | Varpa_0549 | 605457..606515 [+], 1059 | 319791241 | phosphonate ABC transporter periplasmic phosphonate-binding protein | |
3 | Varpa_0550 | 606583..607608 [+], 1026 | 319791242 | phosphonate ABC transporter periplasmic phosphonate-binding protein | |
4 | Varpa_0551 | 607752..609083 [+], 1332 | 319791243 | type VI secretion protein | TssK |
5 | Varpa_0552 | 609312..610676 [+], 1365 | 319791244 | DotU family type IV/VI secretion system protein | TssL |
6 | Varpa_0553 | 610673..614272 [+], 3600 | 319791245 | type VI secretion protein icmf | TssM |
7 | Varpa_0554 | 614269..614913 [+], 645 | 319791246 | type VI secretioN-associated protein | |
8 | Varpa_0555 | 614910..615749 [+], 840 | 319791247 | hypothetical protein | |
9 | Varpa_0556 | 615746..617689 [+], 1944 | 319791248 | serine/threonine protein kinase | |
10 | Varpa_0557 | 617750..619342 [+], 1593 | 319791249 | 3d domain-containing protein | |
11 | Varpa_0558 | 619372..620121 [+], 750 | 319791250 | hypothetical protein | |
12 | Varpa_0559 | 620150..621304 [+], 1155 | 319791251 | hypothetical protein | |
13 | Varpa_0560 | 621430..623403 [+], 1974 | 319791252 | peptidase c14 caspase catalytic subunit p20 | |
14 | Varpa_0561 | 623463..624020 [+], 558 | 319791253 | hypothetical protein | |
15 | Varpa_0562 | 624022..624876 [+], 855 | 319791254 | virulence protein scie type | TagJ |
16 | Varpa_0563 | 624878..625393 [+], 516 | 319791255 | type VI secretion system lysozyme-like protein | TssE |
17 | Varpa_0564 | 625402..627294 [+], 1893 | 319791256 | type VI secretion protein | TssF |
18 | Varpa_0565 | 627258..628340 [+], 1083 | 319791257 | type VI secretion protein | TssG |
19 | Varpa_0566 | 628337..629671 [+], 1335 | 319791258 | type 11 methyltransferase | |
20 | Varpa_0567 | 629741..632521 [+], 2781 | 319791259 | type VI secretion ATPase, clpv1 family | TssH |
21 | Varpa_0568 | 632573..635614 [+], 3042 | 319791260 | type VI secretion system vgr family protein | TssI |
22 | Varpa_0569 | 635629..638226 [+], 2598 | 319791261 | hypothetical protein | |
23 | Varpa_0570 | 638288..639346 [+], 1059 | 319791262 | pentapeptide repeat-containing protein | |
24 | Varpa_0571 | 639379..640023 [+], 645 | 319791263 | hypothetical protein | |
25 | Varpa_0572 | 640037..640432 [+], 396 | 319791264 | hypothetical protein | |
26 | Varpa_0573 | 640520..642898 [+], 2379 | 319791265 | type VI secretion system vgr family protein | TssI |
27 | Varpa_0574 | 642922..643404 [+], 483 | 319791266 | hypothetical protein | |
28 | Varpa_0575 | 643429..644526 [+], 1098 | 319791267 | hypothetical protein | |
29 | Varpa_0576 | 644530..645555 [+], 1026 | 319791268 | 3-oxoacyL-(acyl carrier protein) synthase | |
30 | Varpa_0577 | 645555..646655 [+], 1101 | 319791269 | hypothetical protein | |
31 | Varpa_0578 | 646674..647576 [+], 903 | 319791270 | hypothetical protein | |
32 | Varpa_0579 | 647573..648847 [+], 1275 | 319791271 | hypothetical protein | |
33 | Varpa_0580 | 648855..649007 [+], 153 | 319791272 | hypothetical protein | |
34 | Varpa_0581 | 649130..650851 [+], 1722 | 319791273 | fha domain containing protein | Fha |
35 | Varpa_0582 | 650944..651753 [+], 810 | 319791274 | protein serine/threonine phosphatase | |
36 | Varpa_0583 | 651741..652337 [-], 597 | 319791275 | hypothetical protein | |
37 | Varpa_0584 | 652454..652936 [-], 483 | 319791276 | hypothetical protein | TssD |
38 | Varpa_0585 | 653074..654567 [-], 1494 | 319791277 | EvpB family type VI secretion protein | TssC |
39 | Varpa_0586 | 654624..655139 [-], 516 | 319791278 | type VI secretion protein | TssB |
40 | Varpa_0587 | 655206..656234 [-], 1029 | 319791279 | ImpA family type VI secretion-associated protein | TssA |
41 | Varpa_0588 | 656306..656827 [+], 522 | 319791280 | type VI secretion lipoprotein | TssJ |
42 | Varpa_0589 | 656848..657987 [-], 1140 | 319791281 | hypothetical protein | TssM |
43 | Varpa_0590 | 657984..659309 [-], 1326 | 319791282 | type IV / vi secretion system, dotu | |
44 | Varpa_0591 | 659552..660244 [+], 693 | 319791283 | two component LuxR family transcriptional regulator | |
45 | Varpa_0592 | 660417..661730 [-], 1314 | 319791284 | FAD-binding monooxygenase protein | |
46 | Varpa_0593 | 661780..662064 [-], 285 | 319791285 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein