I. Summary
SecReT6 ID418 insolico
StrainVariovorax paradoxus EPS
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Varpa_28923110336..3111049 [-], 714319793554hypothetical protein 
2Varpa_28933111046..3112170 [-], 1125319793555pentapeptide repeat-containing protein 
3Varpa_28943112167..3114824 [-], 2658319793556hypothetical protein 
4Varpa_28953114838..3115263 [-], 426319793557hypothetical protein 
5Varpa_28963115265..3117610 [-], 2346319793558type VI secretion system vgr family protein  TssI
6Varpa_28973117677..3117874 [-], 198319793559hypothetical protein 
7Varpa_28983117956..3119047 [+], 1092319793560ImpA family type VI secretion-associated protein  TssA
8Varpa_28993119135..3119707 [+], 573319793561type VI secretion protein  TssB
9Varpa_29003119753..3121261 [+], 1509319793562EvpB family type VI secretion protein  TssC
10Varpa_29013121307..3121789 [+], 483319793563hypothetical protein  TssD
11Varpa_29023121930..3122805 [+], 876319793564virulence protein scie type  TagJ
12Varpa_29033122802..3123365 [+], 564319793565type VI secretion system lysozyme-like protein  TssE
13Varpa_29043123366..3125246 [+], 1881319793566type VI secretion protein  TssF
14Varpa_29053125243..3126439 [+], 1197319793567type VI secretion protein  TssG
15Varpa_29063126436..3129174 [+], 2739319793568type VI secretion ATPase, clpv1 family  TssH
16Varpa_29073129208..3131541 [+], 2334319793569type VI secretion system vgr family protein  TssI
17Varpa_29083131556..3133886 [+], 2331319793570type VI secretion system vgr family protein  TssI
18Varpa_29093133942..3136284 [+], 2343319793571type VI secretion system vgr family protein  TssI
19Varpa_29103136310..3136759 [+], 450319793572hypothetical protein 
20Varpa_29113136756..3139422 [+], 2667319793573hypothetical protein 
21Varpa_29123139419..3140537 [+], 1119319793574pentapeptide repeat-containing protein 
22Varpa_29133140534..3141253 [+], 720319793575hypothetical protein 
23Varpa_29143141297..3141680 [+], 384319793576hypothetical protein 
24Varpa_29153141726..3142544 [-], 819319793577protein serine/threonine phosphatase 
25Varpa_29163142537..3144570 [-], 2034319793578fha domain containing protein  Fha
26Varpa_29173144619..3145020 [-], 402319793579hypothetical protein 
27Varpa_29183145163..3145681 [+], 519319793580type VI secretion lipoprotein  TssJ
28Varpa_29193145844..3147220 [+], 1377319793581type VI secretion protein  TssK
29Varpa_29203147229..3148599 [+], 1371319793582DotU family type IV/VI secretion system protein  TssL
30Varpa_29213148599..3152234 [+], 3636319793583type VI secretion protein icmf  TssM
31Varpa_29223152238..3152951 [+], 714319793584type VI secretioN-associated protein 
32Varpa_29233152983..3154968 [+], 1986319793585serine/threonine protein kinase 
33Varpa_29243155063..3155998 [-], 936319793586LysR family transcriptional regulator 
34Varpa_29253156119..3157084 [+], 966319793587alpha/beta hydrolase fold protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.