 |
| III. genome coordinates of the T6SS gene cluster |
| # | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
| 1 | Varpa_2892 | 3110336..3111049 [-], 714 | 319793554 | hypothetical protein | |
| 2 | Varpa_2893 | 3111046..3112170 [-], 1125 | 319793555 | pentapeptide repeat-containing protein | |
| 3 | Varpa_2894 | 3112167..3114824 [-], 2658 | 319793556 | hypothetical protein | |
| 4 | Varpa_2895 | 3114838..3115263 [-], 426 | 319793557 | hypothetical protein | |
| 5 | Varpa_2896 | 3115265..3117610 [-], 2346 | 319793558 | type VI secretion system vgr family protein | TssI |
| 6 | Varpa_2897 | 3117677..3117874 [-], 198 | 319793559 | hypothetical protein | |
| 7 | Varpa_2898 | 3117956..3119047 [+], 1092 | 319793560 | ImpA family type VI secretion-associated protein | TssA |
| 8 | Varpa_2899 | 3119135..3119707 [+], 573 | 319793561 | type VI secretion protein | TssB |
| 9 | Varpa_2900 | 3119753..3121261 [+], 1509 | 319793562 | EvpB family type VI secretion protein | TssC |
| 10 | Varpa_2901 | 3121307..3121789 [+], 483 | 319793563 | hypothetical protein | TssD |
11 | Varpa_2902 | 3121930..3122805 [+], 876 | 319793564 | virulence protein scie type | TagJ |
| 12 | Varpa_2903 | 3122802..3123365 [+], 564 | 319793565 | type VI secretion system lysozyme-like protein | TssE |
| 13 | Varpa_2904 | 3123366..3125246 [+], 1881 | 319793566 | type VI secretion protein | TssF |
| 14 | Varpa_2905 | 3125243..3126439 [+], 1197 | 319793567 | type VI secretion protein | TssG |
| 15 | Varpa_2906 | 3126436..3129174 [+], 2739 | 319793568 | type VI secretion ATPase, clpv1 family | TssH |
| 16 | Varpa_2907 | 3129208..3131541 [+], 2334 | 319793569 | type VI secretion system vgr family protein | TssI |
| 17 | Varpa_2908 | 3131556..3133886 [+], 2331 | 319793570 | type VI secretion system vgr family protein | TssI |
| 18 | Varpa_2909 | 3133942..3136284 [+], 2343 | 319793571 | type VI secretion system vgr family protein | TssI |
| 19 | Varpa_2910 | 3136310..3136759 [+], 450 | 319793572 | hypothetical protein | |
| 20 | Varpa_2911 | 3136756..3139422 [+], 2667 | 319793573 | hypothetical protein | |
| 21 | Varpa_2912 | 3139419..3140537 [+], 1119 | 319793574 | pentapeptide repeat-containing protein | |
| 22 | Varpa_2913 | 3140534..3141253 [+], 720 | 319793575 | hypothetical protein | |
| 23 | Varpa_2914 | 3141297..3141680 [+], 384 | 319793576 | hypothetical protein | |
| 24 | Varpa_2915 | 3141726..3142544 [-], 819 | 319793577 | protein serine/threonine phosphatase | |
25 | Varpa_2916 | 3142537..3144570 [-], 2034 | 319793578 | fha domain containing protein | Fha |
| 26 | Varpa_2917 | 3144619..3145020 [-], 402 | 319793579 | hypothetical protein | |
| 27 | Varpa_2918 | 3145163..3145681 [+], 519 | 319793580 | type VI secretion lipoprotein | TssJ |
| 28 | Varpa_2919 | 3145844..3147220 [+], 1377 | 319793581 | type VI secretion protein | TssK |
| 29 | Varpa_2920 | 3147229..3148599 [+], 1371 | 319793582 | DotU family type IV/VI secretion system protein | TssL |
| 30 | Varpa_2921 | 3148599..3152234 [+], 3636 | 319793583 | type VI secretion protein icmf | TssM |
| 31 | Varpa_2922 | 3152238..3152951 [+], 714 | 319793584 | type VI secretioN-associated protein | |
| 32 | Varpa_2923 | 3152983..3154968 [+], 1986 | 319793585 | serine/threonine protein kinase | |
| 33 | Varpa_2924 | 3155063..3155998 [-], 936 | 319793586 | LysR family transcriptional regulator | |
| 34 | Varpa_2925 | 3156119..3157084 [+], 966 | 319793587 | alpha/beta hydrolase fold protein | |
| |
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
SecReT6 ID
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein