I. Summary
SecReT6 ID420 insolico
StrainVariovorax paradoxus EPS
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Varpa_55196000172..6001155 [+], 984319796145lipoic acid synthetase 
2Varpa_55206001236..6002075 [-], 840319796146hypothetical protein 
3Varpa_55216002164..6003135 [-], 972319796147hypothetical protein 
4Varpa_55226003152..6004717 [-], 1566319796148hypothetical protein 
5Varpa_55236004714..6007635 [-], 2922319796149rhs element vgr protein  TssI
6Varpa_55246007781..6008188 [-], 408319796150hypothetical protein 
7Varpa_55256008704..6012015 [-], 3312319796151hypothetical protein 
8Varpa_55266012020..6012967 [-], 948319796152hypothetical protein 
9Varpa_55276012977..6015805 [-], 2829319796153type VI secretion system vgr family protein  TssI
10Varpa_55286015843..6018563 [-], 2721319796154type VI secretion ATPase, clpv1 family  TssH
11Varpa_55296018629..6019750 [-], 1122319796155type VI secretion protein  TssG
12Varpa_55306019714..6021564 [-], 1851319796156type VI secretion protein  TssF
13Varpa_55316021576..6022067 [-], 492319796157type VI secretion system lysozyme-like protein  TssE
14Varpa_55326022177..6022689 [-], 513319796158type VI secretion system effector, hcp1 family  TssD
15Varpa_55336022781..6024271 [-], 1491319796159EvpB family type VI secretion protein  TssC
16Varpa_55346024274..6024789 [-], 516319796160type VI secretion protein  TssB
17Varpa_55356024914..6025579 [-], 666319796161lipoprotein 
18Varpa_55366025813..6026436 [+], 624319796162type VI secretion lipoprotein  TssJ
19Varpa_55376026509..6027855 [+], 1347319796163type VI secretion protein  TssK
20Varpa_55386027869..6028663 [+], 795319796164DotU family type IV/VI secretion system protein  TssL
21Varpa_55396028660..6029790 [+], 1131319796165ImpA family type VI secretion-associated protein  TssA
22Varpa_55406029830..6030651 [-], 822319796166ompa/motb domain-containing protein  TagL
23Varpa_55416030659..6031648 [-], 990319796167type VI secretioN-associated protein 
24Varpa_55426031645..6035490 [-], 3846319796168type VI secretion protein icmf  TssM
25Varpa_55436035515..6037014 [-], 1500319796169hypothetical protein 
26Varpa_55446037102..6037395 [-], 294319796170paar repeat-containing protein  PAAR
27Varpa_55456037455..6038300 [-], 846319796171peptidase m15b and m15c dD-carboxypeptidase vany/endolysin 
28Varpa_55466038449..6039276 [+], 828319796172hypothetical protein 
29Varpa_55476039304..6042438 [+], 3135319796173rhs element vgr protein  TssI
30Varpa_55486042435..6044504 [+], 2070319796174transmembrane protein 
31Varpa_55496044504..6045751 [+], 1248319796175hypothetical protein 
32Varpa_55506045751..6046083 [+], 333319796176hypothetical protein 
33Varpa_55526046725..6047210 [+], 486319796177hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Varpa_55326022177..6022689 [-], 513319796158type VI secretion system effector, hcp1 family BCAL0343

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Proteins        Genes