I. Summary
SecReT6 ID422 insolico
StrainRahnella sp. Y9602
Repliconplasmid pRAHAQ01 [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq_4561120526..122073 [+], 1548322835243methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
2Rahaq_4562122146..123693 [-], 1548322835244methyl-accepting chemotaxis sensory transducer 
3Rahaq_4563124539..125033 [+], 495322835245type VI secretion protein, VC_A0107 family  TssB
4Rahaq_4564125071..126612 [+], 1542322835246type VI secretion protein, EvpB/VC_A0108 family  TssC
5Rahaq_4565126628..127977 [+], 1350322835247type VI secretion protein, VC_A0114 family  TssK
6Rahaq_4566127974..128648 [+], 675322835248type IV / VI secretion system protein, DotU family  TssL
7Rahaq_4567128650..130326 [+], 1677322835249OmpA/MotB domain protein  TagL
8Rahaq_4568130359..130850 [+], 492322835250type VI secretion system effector, Hcp1 family  TssD
9Rahaq_4569130947..133667 [+], 2721322835251type VI secretion ATPase, ClpV1 family  TssH
10Rahaq_4570133664..136006 [+], 2343322835252Rhs element Vgr protein  TssI
11Rahaq_4571136121..136636 [+], 516322835253hypothetical protein 
12Rahaq_4572136653..140141 [+], 3489322835254hypothetical protein 
13Rahaq_4573140157..140714 [+], 558322835255hypothetical protein 
14Rahaq_4574140730..141179 [+], 450322835256hypothetical protein 
15Rahaq_4575141207..141737 [+], 531322835257hypothetical protein 
16Rahaq_4576141799..142062 [+], 264322835258hypothetical protein  PAAR
17Rahaq_4577142065..143276 [+], 1212322835259hypothetical protein 
18Rahaq_4578143273..146689 [+], 3417322835260ImcF domain protein  TssM
19Rahaq_4579146789..148558 [+], 1770322835261type VI secretion protein, VC_A0110 family  TssF
20Rahaq_4580148522..149604 [+], 1083322835262type VI secretion protein, VC_A0111 family  TssG
21Rahaq_4581149668..150210 [+], 543322835263type VI secretion lipoprotein, VC_A0113 family  TssJ
22Rahaq_4582150223..152745 [+], 2523322835264Rhs element Vgr protein  TssI
23Rahaq_4583152761..154215 [+], 1455322835265hypothetical protein 
24Rahaq_4584154215..155267 [+], 1053322835266ImpA domain-containing protein 
25Rahaq_4585155355..156404 [+], 1050322835267ImpA domain-containing protein 
26Rahaq_4586156494..157333 [+], 840322835268hypothetical protein 
27Rahaq_4587157534..159138 [+], 1605322835269type VI secretion-associated protein, VC_A0119 family  TssA
28Rahaq_4588159158..159589 [+], 432322835270type VI secretion system lysozyme-related protein  TssE
29Rahaq_4589159534..159659 [-], 126322835271hypothetical protein 
30Rahaq_4590159751..160560 [+], 810322835272secreted protein 
31Rahaq_4591160643..162037 [+], 1395322835273ImpA domain protein  TssA
32Rahaq_4592162087..162557 [+], 471322835274hypothetical protein 
33Rahaq_4593163105..164529 [+], 1425322835275cytochrome bd ubiquinol oxidase subunit I 
34Rahaq_4594164532..165539 [+], 1008322835276cytochrome d ubiquinol oxidase, subunit II 
35Rahaq_4595165551..165715 [+], 165322835277hypothetical protein 
36Rahaq_4596165949..166527 [-], 579322835278TetR family transcriptional regulator 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq_4568130359..130850 [+], 492322835250type VI secretion system effector, Hcp1 family EC042_4529

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Proteins        Genes