I. Summary

SecReT6 ID	424
Strain	Rahnella sp. Y9602
Replicon	plasmid pRAHAQ01 [Browse all T6SS(s) in this replicon]
Accession	NC_015062
Location	503886..522056
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Rahaq_4913	499078..500160 [-], 1083	322835589	glycosyl transferase family 9
2	Rahaq_4914	500238..501257 [-], 1020	322835590	glycosyl transferase family 9
3	Rahaq_4915	501609..502580 [+], 972	322835591	LysR family transcriptional regulator
4	Rahaq_4916	502585..503160 [-], 576	322835592	hypothetical protein
5	Rahaq_4917	503886..504365 [+], 480	322835593	type VI secretion protein, VC_A0107 family	TssB
6	Rahaq_4918	504362..505843 [+], 1482	322835594	type VI secretion protein, EvpB/VC_A0108 family	TssC
7	Rahaq_4919	505873..506364 [+], 492	322835595	hypothetical protein	TssD
8	Rahaq_4920	506417..506833 [+], 417	322835596	GPW/gp25 family protein	TssE
9	Rahaq_4921	506846..508648 [+], 1803	322835597	type VI secretion protein, VC_A0110 family	TssF
10	Rahaq_4922	508639..509586 [+], 948	322835598	type VI secretion protein, VC_A0111 family	TssG
11	Rahaq_4923	509590..511503 [+], 1914	322835599	type VI secretion system Vgr family protein	TssI
12	Rahaq_4924	511517..512032 [+], 516	322835600	hypothetical protein
13	Rahaq_4925	512032..512331 [+], 300	322835601	PAAR repeat-containing protein	PAAR
14	Rahaq_4926	512343..513407 [+], 1065	322835602	type VI secretion-associated protein, ImpA family	TssA
15	Rahaq_4927	513404..513979 [+], 576	322835603	type VI secretion lipoprotein, VC_A0113 family	TssJ
16	Rahaq_4928	513979..515373 [+], 1395	322835604	type VI secretion protein, VC_A0114 family	TssK
17	Rahaq_4929	515370..515996 [+], 627	322835605	type IV / VI secretion system, DotU	TssL
18	Rahaq_4930	516003..519440 [+], 3438	322835606	hypothetical protein	TssM
19	Rahaq_4931	519486..522056 [+], 2571	322835607	type VI secretion ATPase, ClpV1 family	TssH
20	Rahaq_4932	522077..523426 [+], 1350	322835608	hypothetical protein
21	Rahaq_4933	523465..524178 [+], 714	322835609	hypothetical protein
22	Rahaq_4934	524374..526248 [+], 1875	322835610	potassium uptake protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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