I. Summary
SecReT6 ID427 insolico
StrainYersinia enterocolitica subsp. palearctica 105.5R(r)
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YE105_C15791849779..1850414 [+], 636332161201alpha-ribazole-5'-phosphate phosphatase 
2YE105_C15801850419..1851477 [+], 1059332161202nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
3YE105_C15811851917..1852225 [+], 309332161203Nucleoside permease nupG 
4YE105_C15821853122..1853724 [+], 603332161204LuxR family regulatory protein 
5YE105_C15831853857..1854342 [-], 486332161205hypothetical protein 
6YE105_C15841854349..1856025 [-], 1677332161206hypothetical protein  TagL
7YE105_C15851856026..1856673 [-], 648332161207hypothetical protein 
8YE105_C15861856670..1857842 [-], 1173332161208hypothetical protein 
9YE105_C15871858046..1859050 [-], 1005332161209putative fimbrial protein 
10YE105_C15881859057..1860220 [-], 1164332161210hypothetical protein  TssA
11YE105_C15891860298..1861323 [-], 1026332161211hypothetical protein  TssG
12YE105_C15901861323..1863158 [-], 1836332161212hypothetical protein  TssF
13YE105_C15911863920..1866589 [+], 2670332161213Clp ATPase  TssH
14YE105_C15921866756..1867316 [+], 561332161214frimbrial protein 
15YE105_C15931867475..1868221 [+], 747332161215putative pili chaperone protein 
16YE105_C15941868451..1871000 [+], 2550332161216outer membrane usher protein 
17YE105_C15951870985..1871587 [+], 603332161217fimbrial protein 
18YE105_C15961871764..1872216 [+], 453332161218hypothetical protein  TssB
19YE105_C15971872240..1873736 [+], 1497332161219hypothetical protein  TssC
20YE105_C15981874075..1874560 [+], 486332161220hypothetical protein  TssD
21YE105_C15991874782..1875318 [+], 537332161221hypothetical protein  TssJ
22YE105_C16001875322..1876671 [+], 1350332161222hypothetical protein  TssK
23YE105_C16011876668..1878044 [+], 1377332161223putative OmpA family protein  TssL
24YE105_C16021878053..1881886 [+], 3834332161224hypothetical protein  TssM
25YE105_C16031882068..1884383 [+], 2316332161225hypothetical protein  TssI
26YE105_C16041884495..1884755 [+], 261332161226Rhs-family protein  PAAR
27YE105_C16051884761..1885603 [+], 843332161227hypothetical protein 
28YE105_C16061885629..1886456 [+], 828332161228hypothetical protein  TagJ
29YE105_C16071886456..1886935 [+], 480332161229hypothetical protein  TssE
30YE105_C16081887067..1888431 [-], 1365332161230argininosuccinate synthase 
31YE105_C16091888723..1890066 [+], 1344332161231hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YE105_C15981874075..1874560 [+], 486332161220hypothetical protein ROD_27741

Download FASTA format files
Proteins        Genes