 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VP_RS06745 | 1483454..1485205 [+], 1752 | 658932605 | hypothetical protein | |
2 | VP_RS06750 | 1485278..1486405 [+], 1128 | 491623207 | hypothetical protein | VP1389 (i) |
3 | VP_RS06755 | 1486402..1491144 [+], 4743 | 491623077 | OmpA family protein | TagL |
4 | VP_RS06760 | 1491226..1492857 [-], 1632 | 491623132 | sigma-54-dependent Fis family transcriptional regulator | |
5 | VP_RS06765 (tssH) | 1492844..1495516 [-], 2673 | 491623235 | type VI secretion system ATPase TssH | TssH |
6 | VP_RS06770 | 1495971..1496489 [+], 519 | 491623110 | Hcp family type VI secretion system effector | TssD |
7 | VP_RS06775 (tssI) | 1496562..1498640 [+], 2079 | 491623168 | type VI secretion system tip protein VgrG | TssI |
8 | VP_RS06780 | 1498640..1499125 [+], 486 | 491623219 | hypothetical protein | |
9 | VP_RS06785 | 1499195..1500536 [+], 1342 | pseudogene | hypothetical protein | |
10 | VP_RS06790 | 1500517..1501509 [+], 993 | 491623051 | DUF2169 domain-containing protein | |
11 | VP_RS06795 | 1501502..1502446 [+], 945 | 491623166 | hypothetical protein | |
12 | VP_RS06800 | 1502681..1504684 [+], 2004 | 491623092 | protein kinase family protein | |
13 | VP_RS06805 (tssA) | 1504684..1506258 [+], 1575 | 491623195 | type VI secretion system protein TssA | TssA |
14 | VP_RS06810 (tssB) | 1506285..1506791 [+], 507 | 491623049 | type VI secretion system contractile sheath small subunit | TssB |
15 | VP_RS06815 (tssC) | 1506800..1508275 [+], 1476 | 491623191 | type VI secretion system contractile sheath large subunit | TssC |
16 | VP_RS06820 (tssE) | 1508337..1508747 [+], 411 | 491623044 | type VI secretion system baseplate subunit TssE | |
17 | VP_RS06825 (tssF) | 1508758..1510506 [+], 1749 | 491623126 | type VI secretion system baseplate subunit TssF | TssF |
18 | VP_RS06830 (tssG) | 1510503..1511501 [+], 999 | 491623152 | type VI secretion system baseplate subunit TssG | TssG |
19 | VP_RS06835 | 1511565..1512017 [-], 453 | 491623128 | Lrp/AsnC family transcriptional regulator | |
20 | VP_RS06840 (tssM) | 1512050..1515439 [-], 3390 | 491623145 | type VI secretion system membrane subunit TssM | TssM |
21 | VP_RS06845 | 1515461..1516756 [-], 1296 | 491623074 | type VI secretion system ImpA family N-terminal domain-containing protein | |
22 | VP_RS06850 | 1517276..1517875 [+], 600 | 491623205 | hypothetical protein | |
23 | VP_RS06855 | 1517885..1519399 [+], 1515 | 491623043 | FHA domain-containing protein | Fha |
24 | VP_RS06860 (tssJ) | 1519392..1519892 [+], 501 | 499418365 | type VI secretion system lipoprotein TssJ | TssJ |
25 | VP_RS06865 (tssK) | 1519904..1521229 [+], 1326 | 491623174 | type VI secretion system baseplate subunit TssK | TssK |
26 | VP_RS06870 | 1521226..1522017 [+], 792 | 491591893 | type IVB secretion system protein IcmH/DotU | TssL |
27 | VP_RS06875 | 1522167..1524323 [+], 2157 | 491623108 | DUF4150 domain-containing protein | |
28 | VP_RS06880 | 1524323..1524916 [+], 594 | 491623139 | hypothetical protein | VP1416 (i) |
29 | VP_RS06885 | 1524916..1525467 [+], 552 | 491623242 | hypothetical protein | |
30 | VP_RS06890 | 1525615..1526144 [+], 530 | pseudogene | hypothetical protein | |
31 | VP_RS06895 | 1526553..1526996 [+], 444 | 491623062 | hypothetical protein | |
32 | VP_RS06900 | 1527018..1527506 [+], 489 | 491623156 | hypothetical protein | |
33 | VP_RS06905 | 1527691..1527984 [+], 294 | 491623041 | hypothetical protein | |
34 | VP_RS06910 | 1528144..1528746 [+], 603 | 491597326 | 2OG-Fe(II) oxygenase | |
35 | VP_RS06915 | 1528811..1530076 [-], 1266 | 491623213 | HD-GYP domain-containing protein | |
36 | VP_RS06920 | 1530652..1531842 [+], 1191 | 491597333 | iron-containing alcohol dehydrogenase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein