I. Summary

SecReT6 ID	430
Strain	Burkholderia gladioli BSR3
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_015376
Location	488136..518953
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	bgla_2g03850	484392..485831 [-], 1440	330819511	serine/threonine protein kinase
2	bgla_2g03860	485828..486748 [-], 921	330819512	sensor protein
3	bgla_2g03870	486745..487716 [-], 972	330819513	hypothetical protein
4	bgla_2g03880	488136..488657 [+], 522	330819514	hypothetical protein	TssB
5	bgla_2g03890	488657..490159 [+], 1503	330819515	type VI secretion protein, EvpB/VC_A0108 family	TssC
6	bgla_2g03900	490281..490784 [+], 504	330819516	hypothetical protein	TssD
7	bgla_2g03910	490859..491680 [+], 822	330819517	hypothetical protein	TagJ
8	bgla_2g03920	491694..492197 [+], 504	330819518	type VI secretion system lysozyme-related protein	TssE
9	bgla_2g03930	492204..494093 [+], 1890	330819519	hypothetical protein	TssF
10	bgla_2g03940	494057..495073 [+], 1017	330819520	hypothetical protein	TssG
11	bgla_2g03950	495159..498026 [+], 2868	330819521	type VI secretion ATPase, ClpV1 family	TssH
12	bgla_2g03960	498143..499141 [+], 999	330819522	hypothetical protein
13	bgla_2g03970	499231..500604 [+], 1374	330819523	hypothetical protein
14	bgla_2g03980	501061..502947 [+], 1887	330819524	rhs-family protein	TssI
15	bgla_2g03990	502944..503492 [+], 549	330819525	putative secreted protein
16	bgla_2g04000	503489..505636 [+], 2148	330819526	FHA domain containing protein	Fha
17	bgla_2g04010	505705..507042 [+], 1338	330819527	hypothetical protein	TssK
18	bgla_2g04020	507039..508448 [+], 1410	330819528	type IV / VI secretion system protein, DotU family	TssL
19	bgla_2g04030	508453..512049 [+], 3597	330819529	hypothetical protein	TssM
20	bgla_2g04040	512046..513686 [+], 1641	330819530	hypothetical protein
21	bgla_2g04050	513683..514405 [+], 723	330819531	protein serine/threonine phosphatase
22	bgla_2g04060	514416..517283 [+], 2868	330819532	serine/threonine protein kinase
23	bgla_2g04070	517430..517834 [+], 405	330819533	hypothetical protein
24	bgla_2g04080	517880..518953 [-], 1074	330819534	type VI secretion-associated protein, ImpA family	TssA
25	bgla_2g04090	519413..519964 [+], 552	330819535	RNA polymerase, sigma-24 subunit, ECF subfamily
26	bgla_2g04100	519961..520914 [+], 954	330819536	putative transmembrane anti-sigma factor
27	bgla_2g04110	521035..522102 [+], 1068	330819537	putative catalase
28	bgla_2g04120	522368..523279 [+], 912	330819538	putative transmembrane anti-sigma factor

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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